BtaINT0061749 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013926 | FCGRT
Description
Bos taurus Fc fragment of IgG, receptor, transporter, alpha (FCGRT), mRNA. [Source:RefSeq mRNA;Acc:NM_176657]
Coordinates
chr18:56415700-56416301:+
Coord C1 exon
chr18:56415700-56415800
Coord A exon
chr18:56415801-56416214
Coord C2 exon
chr18:56416215-56416301
Length
414 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
CGTGCCCCCTCCCGCCCCAGGTC
3' ss Score
11.25
Exon sequences
Seq C1 exon
AAGAGCCGTCGTCTCTGGACAGGATGTGAGAGAGGAACTGGGGTCTCCAGTCACGGGAGCCGGCTGGGGCCGCAGAGGGAAGGGATCGCGGCTGCCAGTGA
Seq A exon
GTGAGTCCAGAGCTGGGGCCCCTAGACCGAGGGAGGAGAGGGCCGGGCGCAGGACTCCCGGGTCTCAGGGACTAGGGAGCCGGCGATCTGGACTTTGGGGTCCGAGGGAGGAGGGGACGGAACTCGCGGTCTGAGGGAGGAGGAGGAAGGAGGAGGAGGCGGGGCCGAAGTCTGAGCCAGGAATCTCAGCCTATCCAGGCTCTGTAACTAATTAACCAGCGCGGATCAAATTAGTGGGTGAAAGTTCATCGAGGAGGAGGGCCTTGTCATCCTCCCCGCGGGATCGAGCTCCTCCACCTGCAGCCGCGGGCGAGCTGGGTAGCCGAGCCGAGCCGGGCCTGGCCGGGCCGGGTCAGAGCTGCGGGAGGGGCGGGCCGGGGGTCCGGAGGAGTCACGTGCCCCCTCCCGCCCCAG
Seq C2 exon
GTCTCCCACTCAGGATGCGGCTTCCCCGGCCTCAGCCCTGGGGGCTCGGTCTGCTGCTCGTCCTCCTGCCTGGGGCGCTGAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013926:ENSBTAT00000018500:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development