MmuINT0063686 @ mm10
Intron Retention
Gene
ENSMUSG00000003420 | Fcgrt
Description
Fc receptor, IgG, alpha chain transporter [Source:MGI Symbol;Acc:MGI:103017]
Coordinates
chr7:45103003-45103755:-
Coord C1 exon
chr7:45103640-45103755
Coord A exon
chr7:45103274-45103639
Coord C2 exon
chr7:45103003-45103273
Length
366 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGA
5' ss Score
6.99
3' ss Seq
ACAAATTTTGGTCTGTCTAGCTC
3' ss Score
5.02
Exon sequences
Seq C1 exon
AAGAGAAGAACTGGAGGCTCTAAGCAGAGGATCCATCGGCTGCAGGCAGAGGGAAGAGGGCCTCTGTGAGGAACAGGCTGAGCGTCAGAGGAGGAGGCCCAGGCCTGGTTCTCTAG
Seq A exon
GTATGAGGGACCAGCACCCCAAGAGGAAAGAGGGTTGGGGCCTGGAGCTCCAGGTCTGAGGGAGGAGTGTTATGACCTGAGGGGGAGAGAGGAGGCTGGGGTCTGAGGAAGGAGAGCAGGACCCCGGGCACCTGAGTCTGAGGGATGAAGCCGGAGCCTAGGGTTTTGGGTTTGAGGAAAGATCTTGGAACTGGACTCCTGGATCTGAGGGAGGTGGAACTGGACTCCTGGCTTGGGTTTGAGGGCTCCTGAGGCTGAAATCTGAGCCCCTGGGAATGAGGGAGGAGGAGAAGGCCTGGATCCTCTGGTCTGAGGGAGGAGAAAAAGGAAATAACAGAAGTCTGAGACAAATTTTGGTCTGTCTAG
Seq C2 exon
CTCTGTAATTAATTAACTAAAGTGGATCAAATGAGAAGGTGAAAGTTCACAGAGGAACACTCCTGTCTGTCGTCTTGGACTGGGTCTCCATCCCACCATCCAGCGTCCTGGTCTACGAAGAGTCCACAGGGACCTTGTGAAGAATCAACAAGGCGGGGTCCAGAGGAGTCACGTGTCCCTTCCACTCCGGGTCACCCTGTCGGAATGGGGATGCCACTGCCCTGGGCCCTCAGCCTCTTGTTGGTCCTCCTGCCTCAGACCTGGGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003420:ENSMUST00000211668:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0012913=MHC_I=PU(10.8=69.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCAGAGGATCCATCGGCT
R:
GAGGACCAACAAGAGGCTGAG
Band lengths:
345-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types