HsaINT1013484 @ hg38
Intron Retention
Gene
ENSG00000104870 | FCGRT
Description
Fc fragment of IgG receptor and transporter [Source:HGNC Symbol;Acc:HGNC:3621]
Coordinates
chr19:49512279-49513473:+
Coord C1 exon
chr19:49512279-49512750
Coord A exon
chr19:49512751-49513386
Coord C2 exon
chr19:49513387-49513473
Length
636 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGC
5' ss Score
6.06
3' ss Seq
CGTGCCCCCTCCCGCCCCAGGTC
3' ss Score
11.25
Exon sequences
Seq C1 exon
GAAGGATATTAAAGAGCACCTGCAGGAATTTTTTAAGGGGATGCCGGGGGAAGGGCTTGAAGGAGGAACTAAGGAGGCTTCCAGAAGATTTTGATTAACAGCGAGCGCTAGGGAAGGCCACGGGGATACAGAGGGGTAGGAGGAGGATCCAGAGACCTCCAAGTTGTGGACTCCGGAGGCATCGAGTTCCTTTCCCAGTTTTGTCAAGAATTCCCTGAGCGGCAGACACCCTCAAAGTAAAAAACGGGAACCACAGAGAAGGAAAAAGAAGAACCACAAGCGTTTTGAGAAACAAACAGGCTGGGCCTAGGGCCTGGGGTGTGCCCTGCAACTGGGGGGTGGGGCTGGATGTTCTTGGAGTCAGGGAGCAGCAGCCTCCCACAGGATGTGAGAGAGGAACTGGGGTCTCCAGTCACGGGAGCCAGGAGCCGGCCAGGGCCGCAGGCAGGAAGGGAGCGAGGCTGAAGGGAAC
Seq A exon
GTGAGCCGACCAGGGCCCGACTGAGGGAGGAGGGGCTGGGGGCCTGGAACCCTGGGTCTGAGGGAGGAGTGGCTGGGGGTCTCGACACTGGGTCTGAGGGAGGAGGGGTGGGGGCCTGGATTCCTGGGTCTGAGAGAGGAGGGACTGGGGGTCTGGACGCTGGGTCTGAGGGAGGAGGGAGGAGGGGCCGGGGGGGCCTGGACTCCTGGGTCCGAGGGAGGAGGGGTTGGGGGCCCGGACTCCTGGGTCCGAGGGTAGAGCGGTTGGGGGCCCGGACTCCTGGGTCCGAGGGTAGAGCGGTTGGGGGCCCGGACTCCTGGGTCCGAGGGAAGAGCGGTTGGGGGCCTGGACTCCGGGGTCTGAGGGAGGAGGGGCTGGGGCCTGAGGGGGGCGGAAGGGGCGTGGCGGAGCTCGGGGCCGGGACTCTCAGCCTATCAAGTGTCTGTAATTAATTAACCAACTGAGATCCAGTTCAGGGGTGAAAGTTCTTCAGGTACGAGGAGGGCATTGTTGTCAGTCTGGACCGAGCCCGCAGAGCCCCTCCTCGGCGTCCTGGTCCCGGCCGTGCCCGCGGTGTCCCGGGAGGAAGGGGCGGGCCGGGGGTCGGGAGGAGTCACGTGCCCCCTCCCGCCCCAG
Seq C2 exon
GTCGTCCTCTCAGCATGGGGGTCCCGCGGCCTCAGCCCTGGGCGCTGGGGCTCCTGCTCTTTCTCCTTCCTGGGAGCCTGGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104870:ENST00000221466:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGAATTCCCTGAGCGGC
R:
GGCTCCCAGGAAGGAGAAAGA
Band lengths:
348-984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains