BtaINT0061753 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013926 | FCGRT
Description
Bos taurus Fc fragment of IgG, receptor, transporter, alpha (FCGRT), mRNA. [Source:RefSeq mRNA;Acc:NM_176657]
Coordinates
chr18:56420050-56421060:+
Coord C1 exon
chr18:56420050-56420319
Coord A exon
chr18:56420320-56420943
Coord C2 exon
chr18:56420944-56421060
Length
624 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
ACAACATTGTCTGACTGCAGAAT
3' ss Score
6.77
Exon sequences
Seq C1 exon
AGCCACCCTCCATGCGCCTGAAGGCCCGACCCGGCAGTCCCGGCTTCTCTGTGCTCACCTGCAGCGCCTTCTCCTTCTACCCACCTGAGCTGAAGCTGCGCTTTCTGCGGAACGGGCTGGCCATTGGCTCTGGTGAGATAGACATGGGCCCCAACGGCGACGGCTCCTTCTACGCCTGGTCATCACTCACAGTCAAGAGTGGCGACGAGCACCACTACCGCTGCGTGGTGCAGCACGCGGGGCTGGCCCAGCCCCTCACGGTGGAGCTGG
Seq A exon
GTGAGGTCCTCCTGGGGAACTGTGCTCCCGACTTCCGGTTGTCTTTTCTCCCTCTGCTGCAGCAACCCTTCCTGAGTCTGACTGCTTTCTGCCCCACCGCTGCCAGTTCGTCCAAAGCCTGACAGCCTCTTGTCCTGCGTTGCTTGCCTCCCCACGTCTGAGTGCCTTCCATCCTGGTGCTGCTGGCCTCGTTGATTCTGGCCACTCGTTAACTGCTATGGGACGTCCTCCCTAAGTCTGACCACCTTCCGTCCTGCTGCTGCTAGTCTTCAGGGAGTCTGACCATTCGTTGTCTGCTGCTGCCAGGCCTCTATGAGTCTGATGTTTTACTGCTCTGTGCCCACCCCTCCTCTCCAAGTTGGAACACCGCCCACTCTGCTGCTACAGGTCCCTTGACCAGAGTGATTGAGACCCCTCTTGCTACAGCTGGTTCTTATATCCAACCTGGGGGCTTTCTAGATCTAGAACATCCTGGGAGTGGCCTTCCCTTTACCCACACCCACTCCCCACAACCTGGTGCTGGGATCTCTGGGGTTGGGAGGGACTGCGAACCCCCCATCCCCTGTCCTGACTCAGATGTGGCGGAGGGTCCCTTAAATATCTCACAACATTGTCTGACTGCAG
Seq C2 exon
AATCACCAGCCAGGACCTCGGTGCCAGTGGTGGGGATCGTCATCGGCTTATTCCTGCTCCTGACAGTGGCTGCGGGAGGAGCTCTCCTGTGGAGAAGGATGAGGAAGGGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013926:ENSBTAT00000018500:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=86.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCTCTGTGCTCACCTG
R:
CAGCCCCTTCCTCATCCTTCT
Band lengths:
342-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development