MmuINT0063690 @ mm9
Intron Retention
Gene
ENSMUSG00000003420 | Fcgrt
Description
Fc receptor, IgG, alpha chain transporter [Source:MGI Symbol;Acc:MGI:103017]
Coordinates
chr7:52349152-52350799:-
Coord C1 exon
chr7:52350530-52350799
Coord A exon
chr7:52349269-52350529
Coord C2 exon
chr7:52349152-52349268
Length
1261 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
ATGATACTTTCTGGCTGCAGATT
3' ss Score
7.97
Exon sequences
Seq C1 exon
AGCCGCCGTCTATGCGCCTGAAGGCCCGTCCTGGCAACTCTGGCTCCTCCGTGCTGACCTGTGCTGCTTTCTCCTTCTACCCACCGGAGCTCAAGTTCCGATTCCTGCGCAATGGGCTAGCCTCAGGCTCCGGGAATTGCAGCACTGGTCCCAATGGAGATGGCTCTTTCCACGCATGGTCATTGCTGGAGGTCAAACGTGGAGATGAGCACCATTATCAATGTCAAGTGGAGCATGAGGGGCTGGCACAGCCTCTCACTGTGGACCTAG
Seq A exon
GTGAGGCTGCCCCTCCAGCCTCAGTGTCTTCTTTGTTTTTTTTTGTTTTTTTAAAAGATGTATTTATTTATTTCATGTATGTGAGTACACTGTCGCTGTCTTCAGACACACCAGAAGAGAGCATCAGATCCTATTACAGACAGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAGGACCTCTAGAAGAGCAGGCGGTGCTCTTAACCGCTGAGCCATCTCTCTCTCCAGCCCCATTGTCTTCTTTGTTTCTGCTCCTGGCTTCTGATTCTCCATTAGCTCTGTGGCCAGTTCCCCCTGAGTCTGACCATGATGAGTCTTGCTGCTACTGGTCTTCATGGTGTTTGACCATTCACTTTTGCCTCTGACAGTTCTTGCCATGGCTTTGGTAAAGCACCAACTTTGTTGACTGTCCTGTGACTGCTCCGCCTTCCTCTGTTGGGTTCTCACCTAGTTCTGTCACAGTGTGGCTGTGTCCTCTCAGTATAGGTCTCCTCCTCCTCTTCCTCCTCCTCCTATTCCTTTTCTTTCTCCTCCTCCTTCCATCCCTCCTCCTCCCTCCTACTTCCTCCCCCTCTCCCCTTCCTCCTCCTCCTCTCCCTCCTTCTCCTCCTCCTCCTCCTTCTTCAGATTTATATCTAAGTGTATCCATATGTATTTAATTTTCCCACTTTCTTTGTGTGAGAGGGGAGAGCAGAGGTGAGTCTGTGCCATGGGATACTTGTGGCGACAGAGGACAACTTGTGGTTGTCAGCCTTGGGGCTCAAACTTAGGTCACCGGGCTTTATGGCAAAGGCAATGCCTTCACTCCTTGAACCTCTGACAGCCTAGATTTATGGAGGGTCGGGCTCAGGTCTCCTGGAATTCGACACGAGTTCTGGGAACCAAACTCTGGTCCTCCGGAAGAGCTGCAAGCCGTCTCTCCAGCACAGTGGCTGACTCTTTTTTTCTCTTTTTTCTTTCTTTTTGTTTTTGTTTTTGAGACAGGGTTTCTCTGTAGAGCTCTGGCTGTCCTGGAACTCACAATGTAGAGGAGTCTGGCCTCTAACCCATAGATCTGTGTGCCTCTGCCTCCCAAGTGCTGGGATTAAGAGGTGTGTCACCACTGTGTGGCCGGTTCTTATATTCAGTGAGGAAACACATGAGGCCCAGGGCCTTTTCTCCGCATACACCCACCCTCAAATACATGCTTCCGGGGGTCTCCGAGAAATCATCAACTCCTTTCTTCCCTGTCTTCATGATACTTTCTGGCTGCAG
Seq C2 exon
ATTCATCAGCCAGATCTTCTGTGCCTGTGGTTGGAATCGTTCTTGGTTTATTGCTGGTGGTAGTGGCCATCGCAGGCGGTGTGCTGTTGTGGGGCAGGATGCGCAGCGGTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003420-Fcgrt:NM_010189:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.187 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTCTATGCGCCTGAAG
R:
CCTGCGATGGCCACTACCA
Band lengths:
342-1603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: