BtaINT0062509 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34979283-34979641:-
Coord C1 exon
chr18:34979522-34979641
Coord A exon
chr18:34979445-34979521
Coord C2 exon
chr18:34979283-34979444
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCAGATGGGGTCATTTCAGAGC
3' ss Score
1.74
Exon sequences
Seq C1 exon
GAAATTGCAGAGCCACTGTTCGACCTGAAAGTGGGCATGGAACAACTGGTGCAAAATGCCACCTTCCGCTGCATCCTGGCCACCCTGCTGGCTGTGGGCAACTTCCTCAATGGCTCCCAG
Seq A exon
GTGAGTTGATAGCCTGTGAGGGTGGGGACCGGGACTCTGGAGCCGCCCGGGCCCAGGCTCAGATGGGGTCATTTCAG
Seq C2 exon
AGCAGCGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAAGTGAAGGACACGGTGCGCCGCCAGCCCCTGCTGCACCACCTGTGCGCCCTGGTGCTGCAGGCCCGGCCTGACTCCTCCGACCTGTACTCGGAGATCCCCGCCCTGGCCCGCTGCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427:ENSBTAT00000063472:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(10.5=100)
A:
NA
C2:
PF0218118=FH2=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGGCAACTTCCTCAAT
R:
GGGGATCTCCGAGTACAGGTC
Band lengths:
171-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development