RnoINT0061040 @ rn6
Intron Retention
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37287070-37287430:-
Coord C1 exon
chr19:37287311-37287430
Coord A exon
chr19:37287232-37287310
Coord C2 exon
chr19:37287070-37287231
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTGAGACAGGGTCCTTTCAGAGC
3' ss Score
-0.4
Exon sequences
Seq C1 exon
GAAATTGCAGAGCCACTGTTTGATCTGAAAGTGGGCATGGAACAGTTGGTGCACAATGCCACCTTCCGTTGCATTCTGGCTACCCTTTTGGCTGTGGGCAACTTCCTCAATGGCTCCCAG
Seq A exon
GTAAGTGAAAACACTCGGGGACTGGAGGTCCAGGCCCTGGAACCAGCTAGGACCAGAGACTGAGACAGGGTCCTTTCAG
Seq C2 exon
AGCAGTGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAAGTAAAGGACACAGTGCGCCGGCAGTCACTGCTGTATCATCTCTGTTCCCTGGTGCTCCAGACCCGACCTGATTCCTCTGACCTCTACTCAGAAATTCCTGCCCTCACCCGCTGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625:ENSRNOT00000084734:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(10.5=100)
A:
NA
C2:
PF0218118=FH2=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGCATTCTGGCTACCCTT
R:
AGAGGAATCAGGTCGGGTCTG
Band lengths:
174-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]