BtaINT0064446 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100926635-100929080:+
Coord C1 exon
chr11:100926635-100926668
Coord A exon
chr11:100926669-100929030
Coord C2 exon
chr11:100929031-100929080
Length
2362 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ATGTTCTTTGTTGTTTTTAGGGC
3' ss Score
11.66
Exon sequences
Seq C1 exon
TAGGTAACCAGTTAGGGGCCTTGGTACATCAAAG
Seq A exon
GTAAGCGGTGGGTTATGTTTTATTATTTATTGATCATTTCTAATTGTTTATTGATCCACCATCTGTACTAGAGTGTTAGAAAGTCAGAGGTTGAGAGTGTGAAAAACCATGGGCTAGATTTCTTTTTAAGACTCAACTTTTTTTGTAGCCCTTTCCAAGACAGTGTAAGCTGAAGGGATAAACTGATACTTGGTATTAAAAATCAACCATTATTGTAAAACTGAACTTAAAAGACTTCTGGGATGTTGGAGCTGTTCTTTCTGCCCACATATGTTGAATTTAAAAGTAGAGAATGTGAAAATTATCCTCCTGATTTGATGGTTTTCCCCGTGTTCTGTGAATCATTCACCTCTTTGCTTGAAAAAAGCCATGCTAAAGAAGTGTGACTTGACTAGGCTTTCCCAAGATGAAGCTCATGTTGCTCCGGGAGTCAGGGCCCAGGATGTGGGAGTCTGGGTGCCCCCCCCCCCCCCCCGCACTAGTCAGAAGCCTCACCCCAGAACCTTGGATGGGTGCCCCGTTGATTTCCCTTCCTCAGTTTCCCCCCACCACTTTCCCATCAATGTTGAGGATTTAGAGAGATACAGAGATCTCTGGGCTTTAAAAAGGCCAATCTGTAAGACAGGATATTTGTGGTCACAATGTTACTCTTTCTATAAGAACAAAATATACAGGGAATATCTCTGGGGGAGGGGCTTCCTTCCCTAAGGGGTGAAATTTGTATGCTGCATGTTTGTTACTATAGCATATTATCCTTTAACCTTTCAGCCCTAGTGATACAGTTTAAGAGCCTCTTTATTTCTCTGCATATTGGGGAGTTTCTAGACATCACCAGGGCACTATCCCAGTGACTTTTTTGTTGTTTCTTTATTTGCTTCGTTTGCTTGTTTGTTTTTTTTTTTTTTTTAATGAATTGAAATACAGTCATGTAACTGAGGTTGTGTTAGTATCACAACTTTCCTATAAAGCCATAGTTCGTCAGGATTTTACTTTGCAAAGCTTTACTTTACTTTGTACCTTAGAGCAGTTTCAGCGTTGGGTTTGTAATAAGGCCTTGTCTTCCCGAAAGCCCAGGGCAGCTCATCTTAACTACATTTTTCCCTCAGAGAGAGTCTGCTAAAATTGTTCTGCGAGCCAAGGAACTGCCTGAGTTTTTGAGTGGGGCTGGTGCTGAACACCTTCTAGGACATTCCCCAGGACTGTCTCCCAAGAGTAGACCACTCTGTGCTGCATGCACAGGCAGCGGCCTGGTGGCTTCGCGTCCGGGAGCATGGTTACCCTTCACCACCACCAGGGGACGTCCCAGCAGGGCCCTGGGTCTCTCGTCCAGTAGACCCTTCAGGCCAGCTGAGGCCTGGCATTGGCGTTTACAGTCTTACTGCTGAGGAAGCCAGGATTCACGTGTCCCCAGAGATGTAGAGAACCCTCGTGCATGTGTAGCATGAGGATGAAGGCACGAGAAGCCGGTGGGCTGCAGCAGCGGCGCTGTTCATGCCGCTGCGTCTCTAAGTGCTGCGCTTTCCCTGAGCACACGCGCTGGATCCCGTGCTTTACGTGATGGGTAAAGATCCAGCTGTGTGAGGGAGGTTTGAAAGTGCTGGCTTTTTTTTTTTTTTCTTTTAAACTACTTGCATTTAGTTTTCCTCCTAAGGTAAATGTTTAGATTTAATTGCTTTCTGGGGTGTTGGGCAAATTGGATATTGTCCACAACACACTATATGGCAAAATTCGAAGAGTTGTTTGAAAGAACCAGTGCAGCGGTTGTTGTTTTTTTTTTTAAAGGCACATAATGGATGGGGTAGCATTTAACAGAAGTCCCTTGCGGAATAAGCAAGGTAATCATTCTGTACTGGTCAGCACCAGTTAGGCCTCAGCAGGACACTGGTTCCATTTGGGACGTCTCATCCCAAGAGGCAGATAAATTAGAGGGTGGCCAGAAAGCAGTAAAAAGATGGGGAAACAAGGACTGTTGACAAGTAGCTGTCTCTCTTCATCTGGGAGACCAGAATCGAAGGCTAAGCACACCCCACGCCTCAGAGGACCTTCAGGTGTTCAGCATTGCTGAGGGTAACTGTAGAAAGAAAAGTCAGTTGTTAGTGGAGCTGATGGTTTCATGAAAGAGGTTTTTTGCTCTGACATAGGGAAAGGGGAGGCTTGGGTCTTTGCAAGAAGTGATTGATCAAAAGGGTCTTTAGGGGGACCGCCTTTGCAGATGGTTGTAGACTTGTTGGCCATGTTGGCATGATTTATTTGACGCCTCTATCCTCTTAAGATTGCCAATATGGGAAGTTTGGGGAGCCGAAAATGATTGCAGAATTCTTTATTCTATGTATTTTTCCAAAATGTTCTTTGTTGTTTTTAG
Seq C2 exon
GGCAGTAATAACAGAAGAATTCAAAGTGCCTGATAAAATGGTTGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072:ENSBTAT00000017383:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development