DreINT0011649 @ danRer10
Intron Retention
Gene
ENSDARG00000086896 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr5:856979-857148:+
Coord C1 exon
chr5:856979-857015
Coord A exon
chr5:857016-857098
Coord C2 exon
chr5:857099-857148
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATGCTGATGTTGTTGTGTAGGGC
3' ss Score
6.08
Exon sequences
Seq C1 exon
TGGCAAACCAGCTTGGTGCAATGGTACATGGTACAAG
Seq A exon
GTGAGTTTTATTCTATTGACTCTCTTATTCTCTGCTATTATTGTGTGTTTCTGCATGTTTGTAATGCTGATGTTGTTGTGTAG
Seq C2 exon
GGCTATAATAACAGAAGACTTCAAAGTGCCTGATAAGATGGTTGGATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086896:ENSDART00000166336:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTTGGTGCAATGGTACA
R:
TGAATCCAACCATCTTATCAGGCA
Band lengths:
80-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]