BtaINT0065889 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018446 | GCA
Description
grancalcin, EF-hand calcium binding protein [Source:HGNC Symbol;Acc:HGNC:15990]
Coordinates
chr2:34176031-34176545:-
Coord C1 exon
chr2:34176432-34176545
Coord A exon
chr2:34176090-34176431
Coord C2 exon
chr2:34176031-34176089
Length
342 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AAATAACTTCTTGTTTAAAGATT
3' ss Score
3.29
Exon sequences
Seq C1 exon
GTTATAGGTTGAGTCCTCAAACAGTAACTACCATTGTCAAACGTTACAGCAAGAATGGCCGAATCTTCTTTGATGATTATGTTGCTTGCTGTGTGAAGCTTCGAGCATTGACAG
Seq A exon
GTATGGACCATTTATGGGCACAGTATTATGGGACTTTTTTCCCCAAATGATGTCCCTCATTTCCTTCAGCAAAGTGATAGTATTATGTGTCTTCCCCTCTTTATTCACTGTTAGATCTTAACAGAGTTCTAACGCTTTAAAACTTCAGGAATATAAATAGTGAAAAAATGTTATAGCTCAGTTTTAGAAAATTTTCTTCATATCTCAGTGGCCTGGGACATTAAAAAAAAAATCACAAGATTTACTAGAGTGTAAAATTATTCCTTTTGTAATACCTGGGGGCACCAGTTATTTAAAAGTAGATTTTAAACTGTAACACAGAAAATAACTTCTTGTTTAAAG
Seq C2 exon
ATTTCTTTAGGAGAAGAGACCACTTGCAACAAGGGGTTGTGAGTTTCGTATATGACGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018446:ENSBTAT00000024550:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(50.0=76.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]