RnoINT0064354 @ rn6
Intron Retention
Gene
ENSRNOG00000007359 | Gca
Description
grancalcin [Source:RGD Symbol;Acc:1306589]
Coordinates
chr3:48658540-48659030:+
Coord C1 exon
chr3:48658540-48658653
Coord A exon
chr3:48658654-48658971
Coord C2 exon
chr3:48658972-48659030
Length
318 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TTTATTCCTTGTGTGTCAAGATT
3' ss Score
4.7
Exon sequences
Seq C1 exon
GTTACAGGTTGAGTCCACAGACATTAGCAGCGATTGTTAGACGCTACAGCAAGAATGGCCGGATTTTCTTTGATGACTATGTCGCCTGCTGTGTGAAGCTCCGTGCCCTCACAG
Seq A exon
GTACTCAGCGTTTAACAGTGGATTCAATTTACGTGGCTATTTTTTTGTGAATAGTGTTTTTGTTTCTTTCAGTAAGTCTATAATAGCATTTTTTTCCTCATCTTTTTTCACTGATACCTAAATAGTCTTAAATATTTAAAATAATGAATATAAATGGAGAAGATTGAGATTGCTCAGTTTTATAATGTTTTCATATTTCCCTTTCTTTGAATATTAAAACACTTAAGATAGTGTCAATCTTAATATCATAGACTTTAGGTATTGAGAATTAATGGGTTTTCAGTTATAATTCTAAAACTTTATTCCTTGTGTGTCAAG
Seq C2 exon
ATTTCTTTAGGCGAAGAGACCACTTGCAACAAGGGATCGTGAACTTCATGTATGAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007359:ENSRNOT00000009697:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(50.0=76.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]