BtaINT0067235 @ bosTau6
Intron Retention
Gene
ENSBTAG00000035836 | GLT25D2
Description
Bos taurus glycosyltransferase 25 domain containing 2 (GLT25D2), mRNA. [Source:RefSeq mRNA;Acc:NM_001191302]
Coordinates
chr16:66471373-66480722:-
Coord C1 exon
chr16:66480603-66480722
Coord A exon
chr16:66471450-66480602
Coord C2 exon
chr16:66471373-66471449
Length
9153 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
ATGTTTCTTGTGTCTTCCAGTTG
3' ss Score
10.53
Exon sequences
Seq C1 exon
GCATCCAGATGTACCTCTGCAACCGAGAGCACTACGGCTACCTGCCCATCCCCCTGAAGCCCCATCAGACCCTGGAGGAGGACGTCGAGAACCTCATCCATGTGCAGACAGAAGCGATGA
Seq A exon
GTGAGTGACCCAGGCTGGTGGTAGCGGCTCGTGTTCTGTTGCCCCCGTGTCCCTATCAGCCACTTCTCTGCTCTCCCAGGACTGAACTCTCATAGTCTGCCTTGGCTGAAACATAGCTGTTCGTTTGTCCATTCATTTCAAACTTCTCCTTATGTGAAATACAAATATGGAAATGTGTCTTTGCCCCCAGGGAGCTTTGCCCCCTGGGAGCTTCCCATCCAGGTGGAGATCTGGGGACACAGTAAATCCATTTCATACCACGTTATAATGGCTACAATGGTGTTTTGTTGTATGGATTTAAACTCTTATTTTGCTGCTTTCTAAGTATATGACTTTAGGCAAGTAATCTAACCTTCTTAGTTGTGAAATGAAGGTAAAACATCTAGGATTTGGGTGCCAATTCCCCATGATATATATAAAAAGTATATTAACAAAAACAGTAATTACAACTTCAACTTAATAATAGCTTATGATGTAGCAGATATCATGCTAAACATTTTTTGTACTTTGTCTCATTAATCCTTATAATACTCAATGAAAGGGGTTTTATTATCCTATTAAAGATGAAGAAATTGGGGTGCAAAGCACATAAGTATCTTACTCTAGATCATTCTGCTAAATAAATGACAGATTGGGATTTGAGCCCATATTGCTATCTCCAAAACTCAGGTTCTTAAACACTGTATCATATTGCCTCTGGGTCTGGCATGATGTCAGAACTGGTAAATGCTTGATAATCAGGGGCTACACTAATTATTATGTATAATGTGCAGTGGTGTTTAAAAGAGAAAGTAACAAATATACTCTGCCTAGGGGAGAATCTTGGAAATGGCTATGCAGAGGAGGGAACATTTGCATAATTGAATCTTCACTCCGTAGCTGGGAAACTCTGTTATTCATCACTAGCGTGTAGGAGGTGGGTATGTGGGCAGTGGGTGTGACTGGGGAGGCACAGTGGAAAGCAGGGCTGGAAGGTGGGCAGGAGCTCAGTTAGAAAGACCTCTGGACTTTTCCTGAAGGGAAGGGAGCTTTTAAAGAGATTTTAGCAGTGAAACGTCAGGTTAAAATCTGGATTTAGAAAGGTCACTCTCTTGGTAAGAGAAGTATGGCTGCAGCCTAGGGCACTGGATGCTGGTCTCGGGTCAGAGGTGAAGAGATCATTTTGGATATTACATGGTAAACTAGGCAGAAGGTGGTGAGGATCTGAGCTAGGGCAGGAGCAGTGAGAGTAGAGATGAACCTTATGACATAGACTTGAAAAGACTTAGCCAAAGGTTTGTGGATGAGCAGAAGAGGGACTGAGGGAAACTTCTAAGTTCTGACTTGAGTGTCTGGAATGACTGTAGGAATGTTAAACACATGTAGATTTAAGAAGACATTTACAAAGAAAAATCATGAGTTCATTTTAAAACCTTGAGTGGCCTGTGAATATCTGTTTCCTGCTGCTCACCCCCAGGCAATAAATTCATTGTTTCATGTTAGTCTCAAGACATAACCCATCCCCTGCTGCCTAGGAGGCACCCAGCAAATCTTTGTTGAATAAATGAACGAACTGCCCAGTGAATAGATGGAGCGATGAGTCTGACACTTAAGTTCTATCAAGTCTAAAGATGTTAAGTGGGGATTCATCAACAAGATAATGTGATATCATAGAATTTTAAGAAAACAGGAACATGAGATATAGAAGGAAGTTCAAGTAAGATAAGGACTGAAAAAGAGTCCAATGAGTTTTTTCAGCTAATTTCCATAAAAAGGATGGTTTCAGAAAAGGCTGGCTCAGAATTTAAAGTGTTTGAGAAGTAATTAAAAATCAAGGACACAAAGAAGAACAGAAATGTTTCTTTTAAGAAACATAGTTAGGACCAGAAGGTAAGAAGGACAATAATAATAATAAAGACTCATCAGAAGATCCCTTTAAATAGCAAGGTCTCCTACTGTATTCACACAGGACTGTGTTTGCAAAACATCAGTCAGCCCAGTATAGCAGGTCATATTGGTGGTAATGAGCAAAGCATGACCATAGACTATACTTGGAATGGGGAGCAAAGCACCCCCACAGTACAGCCTTTGCTGCTGATGCACATGATCATTTGCAAGCCATTTGGTCTTTCCTAGTCTCAATATCCCTGAGTTTGCAGAAAGAAAGAAGAGCTCACTACTATTTTCTATAAGTACAGAGAATAATAGAGATAATGTGTGTGTTGAGGGCAGGGAACCAGTATTCGTAGAGGGAATGAGATTTGAATCATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGCCCCATTGCATGACTGTCAGTCTTGACTCCAAGTAGATGTCAGCTCAGAGAGGCTGGCCAGAGCCCTCTCTTCTTTTCCTCCACAGCAGGAGTTGCCAGCCTCCAGTATCTAATGCCCGATGATCTGCAGTGGGGCTGACATAATAGTAATAGAAATAAAGTGCACAATCAATATAATGCTCTTGAATCATCCCCAAACCATCCCCTTGCTCTGGTTCCTGGAATCTGTCCTCGACCCTCTCTAGACCATGCACAGCCTGTGGCCACAGTAAGGGATTCAGGTTTTTATTCTAAGAGTAATAGGATTCCATGTGGATGGGGGAGGGAGAGTGACATGATGTGGTTTATGTATTTAGATAAATCATTCATGCTGTGGTGTGGATACTGGCATGTAAAGGGACCAGTACATCTCTCCTGGTGAGAAATAATGGTGGTTGGAATGCAAACTGTAGCCGGGAGGTGATGACAAGCAGGTGGATTTGGGATATATTTTGAGGGTAGAGCCAACAGGACTTACAGAGAGCTGGATGCAGCCCATGAAGGAAAGAAAGGAATCAAAGACAACTCCGGGAGTCTGGCCTAGTGTACCGTTCAGTGAAATTGGAGAGGCTTTATGGGGAAAGACTTGGAAGGGAAGTTGTGGCCATGTAAGCTATAAGATATATATTAGACATCTGAATGGAGAGATTAGGAGACACTTGAATATGTGAGTCTAGACTTCAGGAAAGAGACTCCAGTTGGAAACAGACACTTGAGAGTCATCAGCATTAAAAAGACATTGGAAGCCATGGAACAGTGTGAACTTGCTTGGCTGGAGAGCATATAGGAGGAAGAGGACAGGGTGGAGGACAGATCCCGGGGGCGGGGGGGAGACACACAGCCAGTGTTTCAAGAAGGAACCAGCTGTTTTTGAGAAGTCAAGTAAAATGAGGATAGGGAACTGATCACTGGTTCTCTCAGATAGAGATCTGTGATGACCTTGATAAGAACTACTTCAATGCAATGAGGACAAAAGTCATTGGAGTGGGCTGAAGAGAGAGCCATGGGGAGATGAGAAAGTGGACTCTTGTTGGCATGGGAGATAGAGAAATAGGGTAGTGTCTGTAAAAGAGTGAAAAATCAAGGGAAGAGGCTGTTTTGTTTCATTGTGTTTTGTCTTTTAAGTTTTTTTTTTTATTTTTTAGGATCAGATTTTAACTTGTTTGTTAATGAGAATGAGAATACTAATGAGAAAAGTCCAAAACATAGTGAGAATTTAATGATGTAGAAAAGAAGATATTTAAGGCCCTTGAGAAAACAAGTTCTAGATAGAACAGGGATACTGTAGCGAAGGGAAGGCAGGGTATGTAGGCACAGAGGCAGCTGGGCTTGATGTGGAAGGGAAAGATGGGTCTAACCGGGCTTTAAACATTTTCTCCGTTACATATGTGATCCAGTCATCAGCTCAAGAGAGTGTTGAGGATTTCAGGAGAGAGGACAAGGCATAAAATAGACCTCTCAGAGAGTGGGAAAGTAAGTTTACTGTGGCAGCATAATTGCATCATTTGGCAGTATCGAGTGCCAATTTGACATCTGTGGTTGTAATTTTGAAGTCACTCAGTCAACACAACAGTGTGAATTTCTCTCTTCAGTGTTCTTGGTGGGAAGAGAACAGTTGGGTTTAACCAGGATTGGAGTTTTACCAAGCAAGATCAGTGGAAGAGAATGAAGGGTCCTTCCAAGGGATGGTTAGAGCTGTAGACCGTGAAATCTAGGTTGGGTACTGATGGGAGTGACAACAAAAAGGGTGTGATGGATGCAGACAATGTGGTGGGCCACTGGAAGAATGATCGCTGGTGCTGGATTGTTGGTTGTTGGATCACCATGTGGATGCTGTTTCTAAGAGTGGTGGCGGGGTAGTGAGACTGGGAGCCGGTGGCTGAGGGAGCATGAATAGGAGGTACAGAGCCCTGCAACAGGCTTCAGAGAAGCTGGGCTTTTTGAAGAATAAAAGAGAAATCAGTTGGAGTGAGTTGGAGGACATGAGGAAAATCAGCTTTCACACTAACAGCTGAAAGGGAGGCAGTGACCTCAAAGGAAAGCCAAGTCTTGGTCAAAACAAAAAGGCAAAGAGACATTCAGAAAAAGTGAAGGGACTTAAGATATCAGGGAGTTTATGAATTTCAGACTGGAGTTTCTAGAGATCAGAGTAGAAGAGTTTGGATTGGGTGGAGACAGTGTGTAAAAACAACAGTTAACACTTCTAAAGGCACTGACCATCACCGTCATGTACTTGCTCATTTAGTACAGTGGGAGTTGGATAGAAAATTGCGGGACGTATGACCAGAGGCTCAATCTTGTCAAGGGGATAGTAGAAAACAGGTTGTGAGGCATGAGAAGATTGGTTGGACAAATCAGCATGAGGCAATGGGCTAGCTTAGGTGCCTCTTCTCAGTAATGACATTTTGAGGCAACAGAACGTCATGTAAAGATTGTTTAAAATATTGCATCTGAAGTTAAAAGATCTAAAAACTGAGTTCCAGCTCTGCCAGTCACTCACTATTTGAACTCGGGCAAGATTCTGTCTGGGAGTCCTGATCTCAGTTTTTACATCTATCAAGACAAAGAGTACAAGCATGGATGCTCAGTTGCTCAGTTGTGTCTGACCCTTTGCGACCCTATGGACTGAAACCCACCAGGCTCCTCTGTCCTTGGGATTCTCCAGGCAAGAATACTGGAGTAGGTTGCCATGCCCTCCTCCAGAGGATCTTCCCAACCCTGGGATCAAACCTGAGTCTCTTACATCTCCTGCATTGACAGGCAGGTTCTTTACCACTAGCCAACGGGAAGCCCCAAACAGCACACTCTGCCCCCAGTAAAAGTGAAGATAAAATGACCTGGTGACTAGGAAATCACTTGTGTGTGTTAGTTGCTTCAGTCGTGTCCAACTCTTTGCGACCCCATGGACTGTAGCCCACCAGGCTTCCCTGTCCATGGAATTCTCCAGGCAAGAATACTGAAGTGGATTGCCATTCCCTTCCCCAGAAGATCTTCCCGACCCAGGGATCAAACCCTGGTCTCCTGCATCACAGGCAGATTCTATACTGTTTGAGCTACAGGGAAATCCTTAACAAATCACTTTACAAATTGTAAAGCACCTAAATGCCAAGCGTGACTGTGTGGTCAAGAACAGAGAAGTGCCTAAGGAAGAAGATTGTTGTGGCCACAGTGTGCATAATGAGTTGTAACGAGCAAGACAAAGAGCATACAAGTGTTTGCTGTTGCTGTTGCTGTTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCAGAGACGGCAGCCCACCAGACTCCCCCATCTCTGGGATTCCCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGGAAAGTGAAAGTGAAGTCGCTCAGTCATGTCCGACTCTTCGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGACTACTGGAGTGGGTTGCCATTTGAAAGGTGTTAAAACAGCCCAGACATGTGAGTGAGGACCTGAGCAAGGGGGGTGGCTGCAGCCATGGAAGAAGTCCAGGAGAAACTATGAAGAAGTGTTAGGATTTGGTCCTAGCACAATCTTGCAAATGTTTTTCTGGGCATGACTGGGCTGGTGCTCTGTTCTTTGGGTGGAGTTTGTTCCAGTATAGATGACAGAAAGAGCAACACGTGGTGGTCACCCAGGAGCAAGGTCTTAACAACTGAGCTTCTGCGAGCTCAGCCCCATTGCCCAAGGCCAACTTGAGGCCAGTGGCTATCAAGGTCTAGCTTTGGGGGCAGGGTAGAGTGGGAGTTAAGGGTTCATGTGCAGGACCTAGGTCTGACTAGGGTCAAATACCAGCTCTATCAGCTCTGTGACCTTAGGCATGTTATTTAAGCCTTTGTTTGCCTATCTGTAAAAATAGGGACCTGGCCTGTGGGACATGTTGTGAAGATTAAATAAATGTGAATATATATATCAAGAGTGTAGCCCAGAGTGCAGTGGGTAATAAGATCGCTATACCAATAGCTATTATTGTTATTCCTAGATCTGGAAACAATTCAGGCACCAATGAGGCACATCCCACCTGGTGGCAGTACACTGAGGACGTGTATAGGGAGGGATTCAATGAGGGACTGAATCAACTGCGGTTAATGGAGTCAGAAATGACCCAGAACAGAAGCTGGGATGTCTGATGACAGCAAAGAGGCATCCCTTCTCCCCACATAGTCACCTTTTAGGTCTAATTAATATCATCTCCTGTTCGTCCCTGTGGCTTAACTCTACCTTCAGCTACAAAACCCAGACCTGTGTCTCATATTTCTGTTCAATGGTGGCTTTCAGGACCAGCCACTTGTGGCTTTTGGGGGGATACTTGTCCTGTGCACACAATGACTACCCATGTTTGATGGAAGCAAAGTGGCTAAAAGCAGACTCTTCAGCTGAAACGTTAAAGCCAGGCACCCAAATGGAGACCAACAGAGACCAACAGGGAGACCAAAATTTACCCTCCTCTCAAGTCTAAGGCCCAGGGAGGGAGGACTAGACAGCTCCTCAAACAGCATGAACGGGAAGGAGTTGGTATGTTAAGATTTTTTGCTTGTAAAACCTAACCCTGTACATGGTGACCCTGCAATCAACATTTGTTGATTTTAAAAGCAATTAACAGAGTTGGGTGGAACAGGAAGAACCAAAATATTCTGGGCTGCTTAATGGAAACAGAAACACACTCACTGTTTACTCATAGAAATGTGATGGTGAGGGTCAGGTTTGAAATAATATCATCTCCTGTGTTTGGCTTAGGAAATCTGTTTCACTAGTTTCTACAGTTTCACATGACTTGATCATAAGAGAAACTGGATATCATGGTTTCTCTTTAATATCCCAATAAAGGGTGAGTGAAACAAAAAATATTCTTTGGACAGCATCTCAATCAGGACAGCTGAAGTTATGCTGGGATATCTCATAGAGAATGCTGAAATCTCATTTCCACGTGTTGGCACCTCATTCTGCTGTTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCAGAGATGGCAGCCCACCAGGCTTCCCTGTCTCTGGGGTTCTCCAGGCAAGAACACTGAAGTGGGTTGCCATTGCCTTCTCCGGCACCTCATTCTGCTGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTATCTGACTCTGTGCAACCCCATTCTAGGCTGCTTCAAATTTTTGCCTTCTCCATATCAACATTGGCTACTAAGATCATTGTGGTGGGGCTGAGTAGGGAGCATGGGAGGAGAGTTTGTAGATCTGAATAGCAGCAACTCATATGGCCATGACTAACTTCAAGGTGAAAAAGCCCCTTTCATATACCTGAAATAGAGGGGAATGGATATTGATAGACAGTAGCAGTGGCCGTCAACAATAACCCGTTTACCTGCTCTCATGTAGCATTTTCCTTGTATTACGTCTTCAAGGAAAACCAAGTGAGTACTTTGACTTTATTTGGGCTCTTTAATCAATATTATTTCTAACCTTTAAAACATATATATAAGCTTTTCTAAATAAAGCTTTTTGGAAATATGAAATAAAGAAAACTTTTATCACTTGAGATGTGACACTCGTCCCATCTGAAAACTTCATTGTAAGCCCTGTACCAAGTTCTGGGATGTGGCCTGACCCTTGGAGGTGTGTATTAGGGGCTTCCCTGGTGGCTCAGATGATAAAGAATCCGTCTGCAATACAGGAGACATGAGTTCCATCTCTGGGTCTGGGAGATCCCCTGGAGAAGGAAATGGCAACCCACTCTAATATTCTTGTCTGGAGAATTCCATAGACAGAGGAGCCTGTTCATGTTAAAATAAAGGATCTTTTGAGTACCTATAGCTAAACTTGCCTGGATGGAAGAAAAAAAAAGTAGTCCCAGAGTTTTACAATTTTAAATGTATAGAAAAAAAAGCATTCATTAGAAAAAGTCTAGCCTATTTCTGAGTTCTTTCATCATGGGCCACTATGAGTAGTAACTGGGAGTTACTGAGCATTTACTGTGTTGATTTACTGTGGTTAGTGCTTTGCATGTAGGTCTCATTTAAATTTTCTAACACTCCAAGATATGCACTTTTATTATCCTGATTTTACATGCAAAGAAAGAAAGAAACTTAGAGAGGTCACCTATCTGCTCCAGGCCTTCACAGACCAAAGTTTAGACCCAGATCATCTGACTCCAAGAGCCTTCACCCTTAAACATTACCCTGAATGTCCTTCCAAGTTTGGAATGGACATGTACGCACTGCTCTATTTAAAATGGATAACCAACATGGACCTATCGTATGGCACATGGTACTCTGCTCAATGTTATATGGCAGGCTGTATGGGAGGGGATTTGGGGGAAGAATGGATACATGTACATGTATGGCTGAGTCTCTTTGCTGTCCACCTGAAACTATTACAACGTTGTTAATCGGCTACACCCCAATAAAAATCTTTAAAACTATCCTTCATATATTCTTAAAAATAGGTCTTAAGGGAAATGGAGCACATGTTGCAATCTGCATAAAAACAAGTGCTCTCAAAACCAGCACAGTGACCACTGGGGTTCTTGTGTAGCCACTTAACTCTGGAAAACTACTGAGAAGTTATTCCCTACCCTGACCATGCAGGTTGTGTTTCCAGAGGTCAGGCTGCGAATGGGATGCTGTTCTCTGCAACTCTCACTAACAAAGCACTCTGCATGTTTCTTGTGTCTTCCAG
Seq C2 exon
TTGACGGTCCTCCAATGGAACCTTCCCAGTTTGTCTCAGTTGTCCCTAAATATCCAGACAAGATGGGATTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035836:ENSBTAT00000050322:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development