GgaINT0039810 @ galGal3
Intron Retention
Gene
ENSGALG00000004775 | GLT25D2
Description
NA
Coordinates
chr8:8053639-8053951:-
Coord C1 exon
chr8:8053832-8053951
Coord A exon
chr8:8053716-8053831
Coord C2 exon
chr8:8053639-8053715
Length
116 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
GGATCTCTGCTCTCTTTCAGTCG
3' ss Score
7.18
Exon sequences
Seq C1 exon
GAATTCAGATGTTCATCTGCAACCGTGAGCACTACGGTTTCCTTCCCATGCCCCTGAAGTCACACCAGACGCTGCAAGAAGAGACAGAGAACTTTGTGCACACACTGATTGAGGCTATGA
Seq A exon
GTAAGTGGCTGTGCCCCGCTGTGCTGGAGCCCCCAGTGAGCATCTGCAGACACGTTCAGTTGTATCAGTCAAGCGTGTACCTCCAGGTGATGGTTGGGATCTCTGCTCTCTTTCAG
Seq C2 exon
TCGATCGTCCTCCCATTGAGCCCTCTCAGTATGTCTCTGTTCCTCCGAAGCGCCCTGACAAGATGGGATTTGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004775:ENSGALT00000039353:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCAGATGTTCATCTGCAACCG
R:
ATCAAATCCCATCTTGTCAGGGC
Band lengths:
194-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]