BtaINT0067236 @ bosTau6
Intron Retention
Gene
ENSBTAG00000035836 | GLT25D2
Description
Bos taurus glycosyltransferase 25 domain containing 2 (GLT25D2), mRNA. [Source:RefSeq mRNA;Acc:NM_001191302]
Coordinates
chr16:66467828-66471449:-
Coord C1 exon
chr16:66471373-66471449
Coord A exon
chr16:66467935-66471372
Coord C2 exon
chr16:66467828-66467934
Length
3438 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTTTTTTCTTCTTGTATTAGATT
3' ss Score
8.92
Exon sequences
Seq C1 exon
TTGACGGTCCTCCAATGGAACCTTCCCAGTTTGTCTCAGTTGTCCCTAAATATCCAGACAAGATGGGATTTGATGAG
Seq A exon
GTAGGCAAGGTGTCTGTGTCTGTGTGCACCTGTATGTGTGCACATGTGCACGTCGTGTTTATATGTTTATATCAGAACAACAAGCCTGGGCACATGTCTGAGTCAGCCAGAGCAGCTTGGCTGCCGAAAAGAAACTTGGAAAAAGTTCTCAGTTTTTGTTGTGCGTTATTCACTTATCTTTAAAAAGGAACATTATGGGAAAGTGAATTGATCATTGAGTCAGAAAGATGTTACTAATTAGGCATGAAAGTCATATTTTCTAAGAGCAGATATTGCCATGTTTTATCAAGATTCAAGGGTAGGGTAAAGAAGATATATGTTTTAGGTATTAGAGGACTTTAACTTTATTCTGAATAAGTGGAAACCATTCTGGAACATTCTTTGCTTTATTTTCTCTTTGCTCTTCTTCCATGGGAAAAATTGGAGGGCAGGGTTTAGAGGACAAAGGAAAAGAGAAAAAAGAAACCCATTCTAAAATTTGTTTTTGTAGCAGGCAAGAACTTCATAATAATGCTCCAAGGGCTATATTTATTATTACACTATAATTGTATAACGATTGAGCAGAAATGTAACAAGATGCCTGTCTTAGTGATATGCTCAGCAGAACCAGAATTGTGACCCCAAAATCACTGAATCCTTCATGGGTCCCTCATGTCACATAATTGCTGATCCATGTTCAGGAACTTGATGATCTGGAGGCTGGGACAGTGCCTTGGGAATCCACAAACTACGATGGAACTTTTCCATGAATCTGCGATATGTTATAAGCCAAACTTTGTGCTCTATGCTCCTTGCCACTGATTCACTGAAAGAAAATGCCTTGTTTATCTCCCTGTATTATGTCATATGGGTCTCCAAAGTACAGCCATCTTAAATTCCTGCTGGAACTGGAAGTTGGGGGTTAGTCTATGGAATTTATTTGTTGGCAGATTTCAGAAATGAAAAGGAGTATTTCATGAATATTAATTGGAAAGGAGTTAGAAACTATCATGCTATTTCTGCAGAGGGCAAGATGAGATTAGATGGTTTTAAGTGTAATAGAGATGAATTAGACTAAAGTAGAGAAGAATTAAAGTGTAGATAGTTTTATAAACAATCAGGGCTTCAGAAATATTGGCCCACCCCAGATACTGAACTGGCTTCCACATATTACTTACAGCTCTCCTTTTCTGCAGCTTTCACTAACTCTCATGTCTCCAGGTAAAAGAACCCAACGGTCTTTATGTATATTCATTTTTCCCTTTATAAACACATTCCAATAAGGATCAAATCAGAGCAAATACCATGAGACAAAAGCAGGATCTTCTAGCTCTGGTCTTCCATTTGCAAAGACTGGGTCACTTTTAGAAGCCTTCTGAAAAAGGCCAACTCTATGGAGATACAGACACGGGAACTCTGCTCTCCTGAGCCCTGGCAGTCATCTCCCTGGAACAGAGATAGGATAGTAGAAAAGAGGATTTCAGGGCTTTTTCAACCTTCCCTGTACTCTGTGACCTTGTTGGGGTGTCTGGGCTGCATTTGGCTGGGTGGCTTTTTGTCTGTTTACTATTCACTAATATGAGCAAGCCATCTGTGTTTTCCCTTCAGAGCTGCAGTTTTTACTGCACTTGTCCTGGCAGGACCCCGGATGGGATTATTATTTACCGAAGTCTTCCCAGACTAGAGGTCTTGGGTCTGAGGGGACTTTTTGTTGTATTTCTGTTAGTTTTTGGTTTCGTTTTGCTCTCCTGGCGTGACCTCAGGTAGCTCCATGTGTACACATGAGGAAATGCCCATTCCTTCCCATAGCCTTAAAATCAGGAGATGGAACGTGTTCCCATCACAGTAGGATTCTAAACAGGAAGAAAACGACATATAAATGAACACAACTCGTTGTTATAAAATCCCAAGTAACAGGGCAAATACAGTTACCACAGAAATTTTTTTTTAAAGAATTGCACAGTTAAACAGTGGAGGTAATAAAATCATGATATACCTAATCCACTTTGTTCTGATTCAGATGGATGATTTTTTCAAAGAAGACGTCTTGCTCCCCCATCCATTCTTTTCCTTGAGCTGTATAAGTGGATGAAAGTGAGAATATTTTTATAAAATATTGAAGAGTTGAAATTTTACTTAATTCAGCTTTTGATCTGGTAAAATGTATAACATTTTGATACTCCATTCAGAATGATTGTGTGAACCATGGCTTAACCCTCAGTAAAGTCAAAACTCCAGCCTGCTTATATGACATGACTTCTTCTTTATTCTAGACATAATGCAAACTTTATCACAAACCACATATTATAGACAATTTAATCTGTATTGGCCTTGAAGGATAAGATTACTCTACTCCCTCTTTTTACAAACAAGGGAACTGGACCCCATAACATTAGATGTCTTCCTCAAAGTCATCTAGATGGGTCTTTAGGATGAAGCCAGTATTGTCCAACTTTTTCCTGCAGGCTTCTCCTTTCCCATGCTATTCAGTATTTCTCGCTGGCAACTGAAGTCTCCCTCTCTCTCAGGACTAGTTTAATGTACAAAGTGAGTTTATTACTGCTTGCAGAAAAGGACCTTATTAAAGTACTTCATTACCTGTAACAACTTTCATGAGGCTTTGGGTTCTTCTGTGGCTCCTTAAATCTGGGAATAATCAGAGCAGCCTCCTTATCTGTGTAACTCCCAGTAGCACTCATGATTGGTGTGTGTTCGGTGCAGTCATCAGGAATTTCAAGGCTACTGTGAGGAGCTGCAGGAAGACCCAGCCCTCATGGGGGACAATCTGAATGCACACTTTGGGGACTTCATGGATCAGTACATGTCTTCTTATAAGACTTCCGTCAGATCCATGTAATATGGAAATTAATGACTCTCCCTAAAGGACTAATCCCAAGAGCAGAGTCCTTTTTTCTTTACTTGTTTCAGAAAAACTCAAAGAGAGTTGAAGAGGTCTGGTAAAGAAGCTATGAAAATTAAGACCTTAATAATTCGATTTGGAACTCATAGTAATAAGAGGAATTTGTTAAGACTAGATTTTTCTTACTCTTGGAATGACTTTAAACTTTTCTACAGAGGATGTAAATTACAAGAATAGCTAATATTTTGTTCCCAGGTGATAGGACCAGTATGACTTCCATTTTACAGATGAGGAAACTGAGGTGTAGGAATTGGACCAACGAAACACTTAGCAGACTTAGGTCTTGATAAATCCAGCCACTTGCCAAACTTCTTCCTTCCCCTTGGTCTCATATGTTTTGGGTTTAATTCACCTTTGGCCTCCTGAAGAATAGCTTTTTGACCCGATATGAAATACAAATAAATCTTCACCACTTCCCCTAACCTTTCCACTCCTTATTCTAACTAAAGCTTTGTTCCTTATACTTCCTTTGCTTTTCAACAGCCTAAAATAAAAACTGAGTAATCTGTATTTCTTTTCCTTTTTTCTTCTTGTATTAG
Seq C2 exon
ATTTTCATGATAAACCTCAAGCGCAGAAAGGACAGGCGAGACCGGATGTTACGCACCCTGTATGAACAGGAGATTGAGGTCAAGATTGTGGAGGCTGTGGATGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035836:ENSBTAT00000050322:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development