GgaINT0039811 @ galGal4
Intron Retention
Description
NA
Coordinates
chr8:7712515-7713865:-
Coord C1 exon
chr8:7713789-7713865
Coord A exon
chr8:7712603-7713788
Coord C2 exon
chr8:7712515-7712602
Length
1186 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
3' ss Seq
TGTCTTTCTCTTCAACCCAGATT
3' ss Score
7.73
Exon sequences
Seq C1 exon
TCGATCGTCCTCCCATTGAGCCCTCTCAGTATGTCTCTGTTCCTCCGAAGCGCCCTGACAAGATGGGATTTGATGAA
Seq A exon
GTAAGGAACCTATTTTGCTGTCATCGCTTCCCCATCCATTACGTACTCCTTGTAGCTGAGCTTCCAGATGTTTTCCTTGGAGTATAATATGTTTTTACATCATTAGTTCTTTCCCAGTCACTCCCTTTTGGACTCAAACTTTATGCACGGAGAAAGCAGCAGCCCTTATTGGGGAGAAGCTGTGGTGTGTGGCCATGCAGCCGGTCAGGTCTGTGAGCACTTGGTGCTCTGTTCACAAGTTGATCCCTGTGTTTTGTGACAAAAAAAACGCCTTTTGGGAAACTTCTGCTCTTGAGTGGCAGAAGGGAACGATTTCTTCAGTTTTGTTGCTTATTCTGCTACATCTGTTTACACAGCTCACATAGAGATGTGGGAGCACAGCCTAGCCGTGTGTCTGTGTTTGCAGCACAGCTGGTGTAGGTTTTTTCCACGTTGCCCTTTGTGGCTGTGCTGTATTTATCCAGTTTATTATTTTTGTGTTTGTACTGAGCTGGAATTTGATCTGCTTCTTACTGGGATGAGGTTTTGCTCCATGACATACAAAGCTGCATTTGTACATGTCTGCCTGGGGCTGAAAAATATCCCCCCCCTCTGCTGTTTACCTACAAGCGAGGGCTTCAGCCCTCCACCAAGGAGTCTGTGTCCTCCAGGTTGGGGCTGAGCCCTGCCCAGACATCTCTGCTCCAGGTCTTGGCTATCTGCTCTGGCAACGGGAGCAGTGGAATTTCAGAGCCTGAAGTAATTACAAAAATCCTCTCTTTATGGTGTCCTTGTGCTTGGCTGGTGGCCCTGCTGGTAATCCTAAATATGGGCAGTTGCATCTCAGTGGAGAGACATGTGGGTCAGCGTTCAGCTGGAGCTGACCATTGTACTCCGTGTTAAACAAAAATCAAAGCATCCTGTGTCTTTATACAACACAGGCTTGGTCTCTTTGCAGATGTATTCATCCTGGAAAAGCAGCGTTCCCCTGTTCCATACAGACTGGCTTTAGACCAAGAACAAGCCTCTCACCTTTCCCCTCAAAATCAGCCCCAATGTGGGGACAAATTCCAAAGTCTGGAACAGAAACAAACCTGCTATTTTAATGAGTTCTGCTCTTCCTCTGGGGCTGCTGGAAAAAGAGTGGATCAGGGCTCCCCGTCCATGCTTCCAAACCAGGAGGCTGATGTCTTTCTCTTCAACCCAG
Seq C2 exon
ATTTTCATGATCAATCTGAAGCGTCGGAAGGACAGGCGGGACCGGATGCTGCGGACTCTCTATGAGCAGGAGATTGCAGTCAAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004775:ENSGALT00000039353:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]