BtaINT0067238 @ bosTau6
Intron Retention
Gene
ENSBTAG00000035836 | GLT25D2
Description
Bos taurus glycosyltransferase 25 domain containing 2 (GLT25D2), mRNA. [Source:RefSeq mRNA;Acc:NM_001191302]
Coordinates
chr16:66459912-66460377:-
Coord C1 exon
chr16:66460245-66460377
Coord A exon
chr16:66460040-66460244
Coord C2 exon
chr16:66459912-66460039
Length
205 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
3' ss Seq
CTTCCCCCTGACCTTTGCAGGTA
3' ss Score
11.24
Exon sequences
Seq C1 exon
GGCACTCAACACAAGCCAGCTGAAGGCCCTGAATATTGAAATGCTGCCTGGATATCGAGATCCCTACTCCTCCAGGCCTCTAACCAGGGGTGAAATCGGCTGCTTCCTTAGCCACTACTCTGTCTGGAAAGAG
Seq A exon
GTGAATAATGCTTCATTCAGATGTGCAGTTCTGTAATGAGAAGGGAGGAGAGTGGGACCATTTTACTGTTGATGAACCTTCACCGAGATTCCAGTTATGAGCTATTATGTGTTGTGCTACTATACTTTTGACTTTTTAATACCTATTTTGATTAGATAAATAAGTATCAACTTTTCATCGGGTATCTTCCCCCTGACCTTTGCAG
Seq C2 exon
GTAATTGACCGGGAGCTGGAGAAGACTCTTGTTATTGAGGACGACGTGCGTTTTGAACATCAATTTAAAAAGAAGCTGATGAAGCTGATGGATGACATTGATCGAGTTCAGCTGGATTGGGAGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035836:ENSBTAT00000050322:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(23.7=100)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(22.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAACACAAGCCAGCTGA
R:
GCTCCCAATCCAGCTGAACTC
Band lengths:
255-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development