GgaINT0039814 @ galGal3
Intron Retention
Gene
ENSGALG00000004775 | GLT25D2
Description
NA
Coordinates
chr8:8051249-8051703:-
Coord C1 exon
chr8:8051571-8051703
Coord A exon
chr8:8051377-8051570
Coord C2 exon
chr8:8051249-8051376
Length
194 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCTGTGCCCTTGTGTTGCAGGTA
3' ss Score
11.86
Exon sequences
Seq C1 exon
AGCACTGAACACGAGTCAGCTCAAAGCTCTCAGCATCGACATGCTGCCGGGGTACCGGGACCCCTACTCCTCCCGACCGCTGACCAGGGGAGAGATTGGCTGCTTCCTCAGCCATTACTACATCTGGAAGGAG
Seq A exon
GTAAGAGTTGGTGGGTGCTGTTCTTGACAACTCTTGCTATTGTCAAGATGTGGCTGAACTCAAGAGTCTGGGAGTGGTTCTGCCTCCTTGCCTGCAGGATCTGGGAGCCACTGCCAGGTCAGGCTGACCCCCAGTGATCCCAGGGTGCAAGGAGTGTCCTGGGGCTGCCACTGATCTGTGCCCTTGTGTTGCAG
Seq C2 exon
GTAGTGAACAGAGGACTGGAGAAGACGCTCGTTATTGAGGACGATGTGCGCTTTGAACATCAGTTTAAGAGGAAGCTGATGAAGCTGATGGATGACATAGAACAAGCTCAGCTAGACTGGGAGCTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004775:ENSGALT00000039353:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(23.7=100)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(22.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGAACACGAGTCAGCTC
R:
AGCTCCCAGTCTAGCTGAGCTT
Band lengths:
257-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]