BtaINT0068386 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100456452-100458177:+
Coord C1 exon
chr11:100456452-100456527
Coord A exon
chr11:100456528-100458103
Coord C2 exon
chr11:100458104-100458177
Length
1576 bp
Sequences
Splice sites
5' ss Seq
GCAGTACGT
5' ss Score
6.49
3' ss Seq
ACGCACTTGTTTTCTTGCAGATC
3' ss Score
10.5
Exon sequences
Seq C1 exon
GAATGATGTATTTAAAATTCACTGGCTGATGGCTGCCCTTCCTTTCACCAAGTCTCTTTCCTTGGTGTTCCACGCA
Seq A exon
GTACGTATTCATGTTTTGGAGTCATTTATGAAATACCTATACTATCAGGGAAAATACGTTGGAAGACAGGCTACATCCAACAACAGATAAAAGAATGCCTTTGCCATGAAGCCTCCTTTGGTCCAGGAAGGGCTGGTCATGGGATAAATCATCATAGCCTCCCTAGTGCTAGACTTAAGACATCTTTAGATATTATCTACAGACTCAGAGTTTTCTCTTGTAGGTGTTTATTTTTTCACCCTTCTAGTCATTTCTTGAGATTAGAGGGCCACCTCATGAATTGTTTCCACAGCTTCCTTTATTTTTTGAAATATTCCCCCATGTTCCCATTTGATTTGAAATTCACTGTTAGCATACTTGTTTGAGAGGAAACTGACACTCTAAAGATTGAGGCATAAGAATTGAGTCAAGCTCTGAATGTTTAGTGCCGATGCAGACTGAAATGAGCCAGCCTGTGGGAGACAATCACAGCTTCCCCACTTTGTAGGCCTGCGAGATATCTGTGGGCCCCATCTGTGAGGGTGACAGTCTCCAGACTCTCAGGAGCCTACTGCCCTTAAAAATGTTGTCCTAGAAAAAGTAATAACGTATCCAGCTGTAGTTTCAAGAAATGACGATTATTTGGCTAGTTTCCCATTTGGATTAAGGTAAAAAGATTCCTTCTGGAATCATGCAGATGACGAGTCATGGGATTCTTGGGTCACTTTCATATCCAGACAGCCACGTGAGGAGGAATGAAAGGTGCACGAAGGAACTGATGTCAGCTTTGGGCGTCCTGCCTGCAAGCATTTGGGGCACTACTGAAGCTGGCCACTTTAGTGGAAATTCATTGGTAGCTTCAGGTAGCTCTAAATTTACAGGTTTGGTTCTTTTTTTCCCCCCAAAGAAAATAGAGTTGAAGCTGGGTGGTTCCACATAGGTTTTTTAACTGAGTTATTTCTTATGTAAGCAGCAAGGCTATGAGAGAGAAAGCTGTTGCCTGGGATTGAAAATACCTGTGACATTTGGAGGATTTTTTTGTTTTTTGGTTTTTTACATCTTTACTTTTATATATTAATTCATTAATTAGCCATTTAGTACCGCTTGCGGAATCTCAGTTTCCCTGCCCAAGGATTGAACCCGGGACCCAGCAGTGAAAACCTGGACTCCTAACTACCAGGGACTCCCTTGGAGATTTCTTATAAGAAGAGAATAGGCAGCCATTTGCCAGAGTGAATCATCTGCCTCAAGAGAGGGACCTTGGGACTTGCTTGCCGGAACAGAGGTTAAGACTCCATGCTTCAACTGCAGGGGCTGCACGTTCGATCCCTGGTCAGGGACTAAGATCCCACATGGTATGCAGTGGGGCCAAAAAAAAAAGAGAGGGACCTGGACTAGGGGTTAGTGACGTGGAGCCCTCCTCTAGTTTCTCAAGCTCCCTGCCGTTCGCAGTGCACTCACACGCTTCACTGTGCGTCCGCAAGTGCAGGGTTAGGGAGTGGGGGCGGGTATCCCCGTCACAAGGGCCTCTGGTGGCGTTTCCTGTGGGTAAGGCATTGGTAGACGACCTTTCTGAGACGCACTTGTTTTCTTGCAG
Seq C2 exon
ATCGACTACCACTACATCTCCTCCCAGGGCTTCCCGATTGAAGGGTGGGCTGTGGTGTACTACATCACTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204:ENSBTAT00000005512:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(8.6=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development