RnoINT0066892 @ rn6
Intron Retention
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10662652-10663946:-
Coord C1 exon
chr3:10663871-10663946
Coord A exon
chr3:10662726-10663870
Coord C2 exon
chr3:10662652-10662725
Length
1145 bp
Sequences
Splice sites
5' ss Seq
GCAGTATGT
5' ss Score
5.57
3' ss Seq
ACACAGCTATTTGATTTCAGATC
3' ss Score
4.91
Exon sequences
Seq C1 exon
GAATGATGTATTTAAAATTCACTGGTTGATGGCGGCCCTTCCTTTCACCAAGTCTCTCTCCTTGGTGTTCCATGCA
Seq A exon
GTATGTATTAGCATTTGGGGTCATTTATGAAGTGATGTCTGTGCATATTTGGTTGGGGAAATAAGTTAGAAGCAGGGAACAGGTGGGAGATGAAGGCCCCTTTGTACCAGAGAGCTGGCCATGGCCTGTGAGCTCAGCCTCACATCCTACTTATAGGACACAGTCTTTCCAGAACACTGGCTCTTATTATTTTGTTGTTGTTGAGACAGTCTCATGCTGTAGCCAAGGCTAACCTTGAACTGTGTGGTCCTGCTGGCTCAGCCCCCTGAATGCTGGGATCATAGGTGTTCTATGCCTATCAAACATCCCCCCCACCTTGTTTCTGTCAACTGGAGATGAGTGTGCTCCCTGCTGGGTCATTCCTGACACCCCCCCCCCTTGTTTTCCTAAGCATCCTCATATCTCAGTGAAGCCAAATCTTACAAAGATCAGGAGCCCAAGACTGAGATTTGACTACTGAGAACTGGTGCACATCAAAACGGGCTTGCCTGTGGGGTCAAGATTGAGGCTTCCCTGATTTAGGGGTGGGGGCTCTGTGGGGTATACATAAAGAAAGTGCTGAGCTCTCCCTCTGCACTTGAAAATGGGGTCATAGAAGAGAGCAAAATACACCCAGTTATGGCAACAGGACTTAGAAATTCCTTGGCTAATTCCCCCTGTGGATTTAAGTTAAAGATTCTTGGGAGGGCCCTGAGCCACTTTAAGTCTGTGCTGCAGCCCGCTTTCCTTGTCCTGCCAGCAGCCAGCCTCTGAAGTTAAAACGTGTGGCAGCTCTAAGTATCCAAGCTCAGATTGCTGAAGCCAGGTCACTGTACAGATCCTCTTACTGACCAGCCTGACGTTGTCTTATTGGGAGCAGCAGGACTTCAAGACAACATACCTGGCTGGGAATGGGAGTGTTTGCCAGTGTGATTGAGAGTGACCTGGGTTGGGTGTTGGGGTCAATGATGCCTCTGTCAACCTTTCTCAGTTGTGTGTTAGCACACTCCTGTGCTTGCTGGTGTCTTGGTAAGGGAAGTACTAGACAGTGGGGTGGGCGGGCACAACCCATTCCTCATCCCAAGGTCTTTCAAAGTCGTTTATTGCTCTAACCTGCACTGAGGTGCATGGCACAGCCTTTCTGAAACACAGCTATTTGATTTCAG
Seq C2 exon
ATCGACTACCACTACATCTCCTCGCAGGGCTTTCCGATTGAAGGCTGGGCTGTTGTGTACTACATAACTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589:ENSRNOT00000037742:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(8.6=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]