BtaINT0068401 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100452095-100456527:+
Coord C1 exon
chr11:100452095-100452228
Coord A exon
chr11:100452229-100456451
Coord C2 exon
chr11:100456452-100456527
Length
4223 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
3' ss Seq
CTTTTCTTTCTGTTTTATAGGAA
3' ss Score
12.17
Exon sequences
Seq C1 exon
ATCGAGATCACAGAGAAGAATCCTGACAGCTACCTCTCAGCAGGAGAAATTCCTCTCCCCAAATTATACATTTCCATGGCCTTCTTCTTCTTTCTCTCTGGGACCATCTGGATTCACATCCTTCGAAAACGACG
Seq A exon
GTAAATTGTCACCTTCTTGAGCCCTTCAGCCCCCAGGGTTTGGGGATGTGTTTGTTTAGTTTCACCTGTTGCTGTCTTCCCAACCAGGAGACCTTGTCACTAGCAGTCCCATCCTCTTCAAAGGGCATCTTCCCTGAAACAAGGGGGACTCTGCAGAAGCCTTACAGTGTGGGAGGCCTTTGCATGCCATGATGTTTGTTTACTTCCTATTGCTTGGTTTAAAAAGCAAATCCAAATACTTCAGTAATATACAATCGAAGTAAAATATATAAGCCAAGTGTTTCCATAGCAAGGTCTGGAGAAGGAAATGGCAACCCACTGCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCATGGTAGGCTAGAGTCCACGGGGTCACAAAGAGTTGGACATGACTGAGCGACTGAGCGACTTCACTTTCCATAGCAAGGACACCCCAGCTCAGGACTCAGAGTGAATGCATTGGTCACATTCAGGGGCTATTTGTTCTTAAGACAAGAGGCGTGACCGTGGCCCAGGGCCTGGTGGGAGCCTGGAGCTGCTGCCGAGCTCTGAAGGCCCAGCCAGGGTAGACATTGCCCTCCAGAAGCTCGAGAAAACCTCTTCAAGGCCTACCTGCCTGACTCTTGGCCTTTCTCCTGAAACCCCCGAGGCTTTAACTTCCTCTTCTTGGTATTTGAGGGGAGCAGCAGCGTATGAGTGGAACTAGTGATTAATTCTGTGTCCCTCCCCAAAGTGGAAACGAAATGCTAGTTTTCAGTTAAAGAATAGTGTTTGTTATAAAGTCCATAAACTGTGTAAAGGAAGGTATGGAAATACAGTATCATAATAGAGATTTAAATTCACACAATAAATGAGTACCCCAAATACCAGATGCCTCCTCTGGAGCAGTGGGCCAGAAATGGAGACCTCTAAGCCCTGGTAGCCTGCCTGTCTTCTAGTGGACATGGCTCAGCTTGAATACTGGGCTCTGCTGGGTGCGGTTTGCTGTTTCCTGTTTGTTGTAAGTCTTTTACACCCACTGGATGCAAAGAACGTCTTGTTTGCTTGTGAAGGACTCTACATAATCATGTTTGGACTAGAGATCGGGAAACCATTAATAAGAAAAAAAGAATCCTGCAAATTCAGGCCGTAAAAGATGGTGGAGGGTGGTTTTTATTGTTGTTGTTGTTAAGGTTTTGCTCTTACCTTTAGTAGACAAGTAAGAACTAGGAGTTGGAAACCTGGTTTTCAAATGTAAATGCTGACTGTTGCTGCTACTGATTGAAGTGTACCTGGCTTCACTCTGTAATTCTCTTTTTCCTCATCTGCAGAACTGAAACAGTCATAATGTGCCATAATCTGCCTTCCTCTCAAAGTCTTAGATCTTCAGATTTCTTATGTGATTTCCCCTGAAATGATGTGTACAAGAGGGCTTTGCAAATCAGAGTGCTATGCAAAGATGAGGCACATGCAAAATAGCTTAGCCAGATGTTCATTGGTATTTTAAATTCCCTTTATTTAGCGAGGCAACAGTCACTGTCACTGGTTCACTTTTATATAAAACCGTGATGACAGTTTAAAACCTGTGGTTAAATGAGGCTGACCTGCTTTGGGCAGTGTATTTTAAACTTCTTGTTGAAGTGTAGTGTAGATCCAGAAACATGTCATTCTGGCCCTCTGCCCACCCCCACCCCCGATGTTTTTCCAGGAGTCTTGAGCCACAGGGGGTTGGTGATTTGAGTCACATCACGGATGTGCCTCCAGGGCTCTTTGAGAGACTTGCAGCCCCTAGAGTTGGAGGGAGCTGAGAGACTTGGGCCTTGGCTTGTTGAGGCCTCGAGAGGGGAGGTGAGAGCCACAGTTGGCGTCCCGGGCACAGCTGGCCTGGGCCCACGTTGGTCTGCTGTGCCGTCGTGGCCTCTCTCACGTCTGCGAGTTCTGTCGTGGCCCCGGAGCATGGGGAGCCGGGGAGGGAACACGCACAGCTGGCCCGCTTGGAGCCGCTCTCCGCCCAGCACGGTGCTGGGTGTGGTGGTGCCATTTTCAGCAGAGGTTTCTGAGGCCTCGTGAGAGGAGGGTGGTCAGGGTAGAGCCCGTGTGTGAGCCTGGTCGCTGCCCCCCCAGAGCTCGAACTCTTGCCTGCCTTCACCTCCCGTCGCCGCTGTCCCCCAGGCTGCAGGTCGAGAGGGCCAGGCCGTGAGGGTGAGCCCAGCCCTTGCCGGCTCTGCAGCCTGGGTGAGTCTCGTGGCTACTGAGGACCGACAGACTCCTCTGGCCTTGACTTCCCTTTCGACCTTCAAGTAGGTAGGCCCTGGAGCAGGAAAGAACCAGGGAGGAAGCCAGCCCGGAAACTGGTGTGCGTCACTCACGACCCGCCCTCCTTATCGTTCTGTGCAAGGCCCTCTCCTGTTTGACTTCCTGTCCCCTCTCTCGTTCCTTCCCACCCACGGCCAGCTGCCCAAATGTGTTTCGTTTGTGTTTTGGGGTATTTGTGTATCTTGATAAACAAATCACGTTTACTGGTATTGAATGTGTTTTTAATTTATATGAACTGTCCTGTCTGTAGGTATTGTTTTCGTACCTTGTTTCACTTGGTAACATCCTCTTTAAGATGCAGGCACATCGCTGCATGTGCGCCCAGTTCATGGCTGTTCAGCTCCTCCGTGTCATCCAGTGGGCGCCCCGTTTTGCTTGCCCGCCCCCTTCGTGGTGGACCCTTAGCTTGTTCTCATCTCCCTGCTCCCCTACCCTGTCACCCGCCCGCCTGCCTGTCCCCAGATGGCTTGGGCAGCCTCTGAGGTTCATTCCGGAAGGAGGCGCGCTGCGCGTGGGGCGTGCGCTTCTTCAGTTTCACCGAGCGCTGCCAGGTTGCTTCCCGCAGGGCCTGGGCGGGTGGTGCTGCTCCTGCACGCGCCAGCACTGACACCTGAGCCGGTGCCTGGTTTTCTCTGGCGTGTCTTCAGCCTCCCGGGCTTCCCCGTGTGACGGCCCGTGTTTGCATTATCCTTCTGCCGGGTTTGCTGTCTGTCCCTGGTTGCTGTGCTTGAGTTCGTGCACATTGGAGTCTCAGTCCCTCGTATGTCTTAAGACATTGGCGATTTCTTTTCCCAGTTGAATTGTTGAGGGAAAATCTTTCACGTTGATGGAGTCGAGGCCATGTAGTTGTAGCCTTCTGGGTCATGCCTCGTGGATCCTGAGAGGCCCATTCCTACTCCAGATCACAAAATGTCTATTTTCTGTTTAGCAGCCAAATCCCCCTGGGGTATAGGTAAGTGTGAAGCTGAGGTCAGCTTTCCTCATTTATTATATAGGTTTGAGCTGAGGTTGGTTTTTTTTTTCCTCCAGTGCCAGTTATTAAGCAGCCTCTTCTTTTCCCATTGACTTGGTGTCACCTTAAATATTAAGCTTCCATACATGCACAAATCTATCCATAAGCTTTCTAGTCTGTTCTGTTGGTTTACTTCTCTGATGCTCACTGTCCCCCATATTTTAACTGGTGTATCTTTGCAGATTGTCTTGATATCAGAGAGTGGGAATTCCCCCTGTCGCTCTTCCTCAAGTCTTTGCTTTCTTTCATAGGGTTTAAAACTTTTTCTCTGTCATGGTTTTGTGTGTCTCACAGGTTAACTCCTAGGGCGAGGCGGGAAGGGGTAGAGGAATTGAATGTCTGGCAGCCTGAGGGTGGACTAGTGCCCGTAGAGGATGTGGGGGGGAGTGGGTGCTGTGTCTCACTGGCCTGGTGTGTTTGGCAGGTTCCAGCCTTGAGGGGACAGAGAGGGGCACGGTCTTTGACCATCCCTGCTACCTAGCACCAAGCCCACCTCTCCTCTGGGCTAGCAATTTTCCCTAGAGCTGTGCCCAGTCACCTCTGCCTTCTTGGGGATTTTGTGCCATTTTCATAGATCCATCTGCCTCTTTCTTGCCTCTGTGGGCTTTCCAGGGTGGTTTCCGGAGAGGAAACTGGCAACCTGTTTAGATTTCTATCTTATCAGGCCTGGGAACCCATTGTGCATAACTTGGCTCCATTCACAGAGTTGGATTACATGGTAGAGATGACTTGGAACCCCATTCCACGCCTTCTCTGCTGGCAGCAACCACTTTTTAAAAAAGCTTTGTGTTTGTGGTTTGCTTAGATCATATTTACGACTTCCTTATAAATATATGATGGGTGGGGCTTCAGCTATCCTTTGGGAGTGTAAAATTGTCCTTAAATTCTTTTCTTTCTGTTTTATAG
Seq C2 exon
GAATGATGTATTTAAAATTCACTGGCTGATGGCTGCCCTTCCTTTCACCAAGTCTCTTTCCTTGGTGTTCCACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204:ENSBTAT00000005512:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(15.1=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development