MmuINT0072820 @ mm9
Intron Retention
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31033774-31039175:+
Coord C1 exon
chr2:31033774-31033907
Coord A exon
chr2:31033908-31039099
Coord C2 exon
chr2:31039100-31039175
Length
5192 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTTCTTCTCTCTTTTTATAGGAA
3' ss Score
13.03
Exon sequences
Seq C1 exon
ATTGCTATCACAGAGAAGAACCCTAACAGCTACCTCTCTGCCGGGGAAATCCCTCTCCCCAAGTTATATGTTTCCATGGCCTTGTTCTTCTTTCTGTCTGGGACCATTTGGATTCACATCCTTCGTAAGAGAAG
Seq A exon
GTAAGTGCTTGAGTGTGTGGAGAGCTGCAAGATTTCATCCTCCTGGATTTTGCCCCTGGGGGAGGTGGCACTGAGCAGCCCTGCTCTCTTCTAGGGTGTCTTCCCTGAGACCCAGAGGCTAGGCAGGAGCCTCTAGTGAGAGGCTCTGCCTACTGTGCTGTTGGCTCACTCTTAGTGTTTTGTTTAGGAAGCAGGTCCAGATGTTAAATACACAAACAGCCCAAACACACAGTGTCACCCTTGCAGAGAGGCTGAAGCCCAGGATGGTACCTTGTAAGAGATGCCCATCTTTTTTTTTTTTTAAAGATTTATTTATTCATTTATTTTATTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTTTTCAGACACTCCAGAAGAGGGCGCCAGATCTTGTTACCGATGGCTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGAACCTCTGGAAGAGCAGACAGTGCTCTTAAGCACTGAGCCACCAGCTCCAGGAGACACCCATCTTGAGAGGAGTTAGTGATGACGTCAGTCGCTGTCCCAGTGGAAGCTTAAAGCTTCCAGCTCTGAAGCATCGGCCGAGAGCCTCCCTGGACTCTCTCTGTTGACCGCCAGGAGCTTGACTCTGGGAAAAACCCATTTGGAATCCATCTGCCTTTCACCAGGACCCTTGTCCCAAAACCCTCTCTGTTGCTGAGGGACGTGGCTGTGTAGGTATGAATTCTGTCTCCTTGCCCAGAAATCTTAGAACAAAATAGTGTAAGACATTTTTACATTAAAAGGCCTCTAGACTTGGGATATGCAAAACCATGTTACCCAAGACTCACATGATAATCAAGTGCCCCAGACACCTCTCCCTGGAGCACCGGGGCAGAAGCTGAAGCCCTGGGTGTCTTGATTGCATTTTAATGGACACTCAAGAGTCTTGGATATGGGTCCTTTTAAAAGGATGTTCCATGCTGTCAGGATCATTTAGTGGGTAAAAGCCCTTGCTACCTAGCCTGATGACCTGAGTTCAGTGCCCTGGTTCCACATGATAGAGGAGAAAACTGACCTGACTCCGGCAAGTTGTCCTCTGGCCTGCACTGTGCACCACGCACGACTCTGTCCCAGGCACACCTTGCCTGTGACCTCCAGTTGCCCCTCTTCACCATGCCTGTTCCTCAGCTGCAGCCCTGGAGCAATGGTAATTGCCCTTCTTCCTGCCGAGCCTCTCACGTCTGTCTTTGCACCAGGATGCTGTGCAGTGAGTACTCGTGGACCTGCTCGCTTGCCCACACTCCCAGGTGTTTCCTTTGCTTTTACTCAGCAGTGGCAGTGTCACTGCCTCGGCTCCCTTTTCTAAGATGGTGGTTAAGAGGGCTGATCTATTTTGTGCCAGTCATGTTTTTAACTGTGAGTGGATGTGTACATATCCAAAAAGATGCAAATTAAGGCATCCCATGTAACAGCCAGTGAATGCTGGTAGACTGGAAGTATGTATTTTACATGTAGGAGGTGTTTAAGACGCTTGCTAGGGCTGAGAAGAATGAGACATCTTTGTCACATAAATGTACTGAGGCCCAGAGAGTGGAAGTGAGAGATAGACACTTACCTGACTGAGCTGGGGCTGGAGGCCAGGGCTTCCTGCTGGTGCTTGTCTCTCCTCTCAGGTTTATATGCTGTGCACCCAGAGTGGGAGCAAGCAGTGCTGGATGCAGGGTGAGAGGCAGTGCTTGCAGGTTGGCTGCTTTTCAGGGGAGGTGGAGCTGTGCCACTTCAGAGATGAAGGTCATCAGGGCCAAATCAATCAAGGCTGGGTCGTCGTGACTTCCGAGCCTTTCATTGTCCCAGCATGGGTGTTTAATTGAGGACCGAAAGTCAAACTGGCCAGGATGTGAGTGTGGCCTTTTCCAGTGGGCAGTGTTGTATTCTGGGAAAAGCCACTGCCATTCAATAGTAGACTGCTCTGGCAATGGCTTCCCTTTTGACCTTCAGTGAGGAGTCACCAGAACAGGAAAGTACCCAGGAGATAAACAAGAAGCCCAGTGTACGTCAGGCTGTGTATGGTCTCATCATCTCTCTATTCGTGCTCCTTTCCCAACTGACCATCCCCCACTACTTCCTGTCCCTCGCCCACTTCTCAACCACAGAAAGTCACCCCAATATGCTGAATATATTGTTTGGGACATTTGTATATTCTCGTAAGTAATGTCTGCGGTTCGCTTGGTTTTTGTTTTATGTATGTTTTAAATGTATAGAAAGTGTTGTCTGCAGATATAACTGTTTAAAATCAGTGACACTGCCAGGTAGTGGTGCACATGTTTAATCCCAGCACTTGAGAGGCAGAAGCAGGTAGATCTCTGTGAGTTCGAGGCCAGTTTGATTTACTTAGTGAGGACAGCCAGGGCTGAACAGGGAAACCCTATCTGGAAAAAATATAAATTAGTGACACTTTTCCCATCAGCTGTTCTGCTGTCTGCATCCTGATGGCTGATTTTAGCCACACCTCCATGTTCCATGGGCTGCATCCTCATGGGTTCCTCTGCTGTCCTGAGAGACAGGAGTACATGCAGTTGCCAGCTGCAGTCTATATGCTACTGCAGAGTACTGGAATAGCCTTGTCTCCTACTTCTGAGCTCTCCTAGGGACCTGTCCTTTGAAAGTTTCCTTGAATGTTGTCAGATTGCCCACCTCGTGGCTGCACCACTTTCTACTTTGTCTGGGAGCTGAGCTCTGTCACCATCCTCTCACTATAAGTGGCCTCTTGATGTGAGCCAGTCTGGTGTGTATAAACTGTTGGGGTAGTCTGTCTTCTCAGTGTCCCCACTGGGGACTCTCATTGCAGGCTTCTATTGCTTACGTATTGGATTTTCTCATTGTCTAGCTGTTCTACATGAGCAAAAGTCTTCTGTGTTCCTTGTCTGGCTACACATGCAAGTCTTGTCTCCAGTCATTATGGTCATTAGGCTAGTCAGCAGTGTGTGTTGTTGAATGAAAGTTTTGACTGTGATAGAGCCCCACCATCTAATTTCATCTTTGGGGCCATGCTGCTTGGGTCCTAGGGGCCCTTTGTGATCCCAGGTCACAAGGCAAGTTTCATTCACAGCCGAGCTCATCTGGAATCGCCCGAAAGTGAATCGAAGATAGTGAGCCCAGCTTTACTTCCCTCCTCCTCCTCCTCCCCCTCCTCCTCTTTTCCTTTCTTTCTTTTTTTAGAGGGAGGAGTTGGTTTCTCAAGACAGGGTTTCTCTGTGCAACCCTGGCTTCCTGGAACTCCCTCTGTAGACCAAGCTGGCCTCAAACTCAGAGATCCACTGCCTGTAACCTCGAGCTTTTCCACCCACACTCAAGTTCACAAAAGAATGACACTGAGATTTAGGGTTTCAGTGCCTAGGCCGATAGCTTTGGCTTGTTCCCCAGCTAGCTCATAACTTAACTACCCATTTATTGTATTCTAAATCCTGCCTTGTGCTTGGTTACCTCTCCTTGGTTACATGCTACAGTCCCCTTCAGTGTTCCAGGGTGTATATCTCCCCAACCCCCAACACCCCCCAACACCCCCCACACCTCACTATCCCAGAATTCCTCTCTCTGTACCGGACCTTCCACCTCACTATTTCCTGCCTAAGCTAATAGACCAACAGCATTTTATTGACAGGTGATCCTTCCATACATTGCACAAGAGATTCTCTCTACCTGCTTCTGCCTTCCAATCGCTGGGATCAAAGGTGTGCACCACCACTGTGCGGCTGCTTTACTCTCTTCTAGGTGTCGGTTCCAGAGGATTGTTTTTAAGATTTATTTATTTATTGTGTATAAGTACATTGTAGTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCATTCAGTGCTCTTAATGACCGAGACATCTCTCCAGCCCCCCCCCCCCCATGGTTTTTTTTACCACTGTAGTCACTAAGTAGTCTGTCCTTTCCCACCAAGCTGGACTGGCTTCCTCTTCCATCAAGCTTGTGTACGTGTGTGGGTCTTCCTTCTGCACTGTCGTATCTGCCACACTGCTTCACTCCCCTTGGAGATTAATGTCCTGCTCCTGTTTCATGTACTTATTACTGTGCTATTCCAGCGTCTTCATGTGTGACGGTGTGCACACGTCCTGTGCTCTGTGTACTTTAAGAGTCTTATTTGTCCTTGAGTTCCTTCCTACAGGAGTCGGGGTGGACATAGAAGGAAGGATGTAATACCTGGAGCTCAAGGGTGGCCTAGAGCCCGGGAGAGCCACCAGGCTGCTCAGTGGGGAGGAAGGGCATGATGTCAGTACTTCTCCTCACCTGTCACCGCAGCCAACTCCCAGGCCGTCTGTGCTGGGCTCAGACATCCTCAGATACAGCTCATTTTCTGTCTTCCCTGGGATTTCATGTTGTCTTCAGGACTGCCCTTCTTATTCCTGTGTGGCTGATTCAGTGTGGTTTCCAGGGAGGACGCTGGTGCGCTGTGCAGATGTCCATCTTAGCATGCCTCAGCAGACGTCACACCTGCCTGCAGTGCATAACTCTGGTACTGCATTAAATTGTGTGCTGGAAATGTCATAGGACTTAGCTTAGTTCCTTTTCTATTGCTGTGATAAGATACCGTGACCAAGGCAACTGATAGAAGAGAAAGCTTATTTGAGGCTTCCAGTTTCAGAGTCCTTGACCATCATGGTGGGGTGTGGCAGCACACAGGCATGCACTGAAGTAGCTGAAGGCTCACATCTTGATCTATAAGTGTGGGGCAAAGAGCCAACTGGGAATCCCTTAGCTAGATCACACACACTTCCTAATCCCTCCTAAAAAAATGACTTCATGTTTGTGGTTTGTTCAGAACGTACTTGTTGCTTGCTTAGAAATTTATCTGATGGAGCCAGTAGTGCATACTTTTGATCCCAGTACTTGGGAGGCAGAGGCATGTAGACCTCTGTGCATTTGAGGCCAGCATCGTCTCCATAGTGAGTCCTGGACAGCCAGGGCTATGTAGAGAGAGCCTGTCTCAAAAAAAGAAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAGAGAAGAAGCACCTGACACTGTAGCTGCCTTTGGGAAAGTGGAAGTCTTTAATTCTTTCTTCTCTCTTTTTATAG
Seq C2 exon
GAATGATGTATTTAAAATTCACTGGTTGATGGCCGCCCTTCCTTTCACCAAGTCTCTCTCGTTGGTGTTCCATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-Gpr107:NM_178760:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(15.1=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: