BtaINT0069390 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007662 | GRP78
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N614]
Coordinates
chr11:96118943-96119306:-
Coord C1 exon
chr11:96119247-96119306
Coord A exon
chr11:96119169-96119246
Coord C2 exon
chr11:96118943-96119168
Length
78 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CCGGGCCCTGTCATCCTCAGCTC
3' ss Score
7.46
Exon sequences
Seq C1 exon
GGTAGACGCTGACCGAGACATCACAGACACATCAACTTAAGCTTTTCGTGCGTTTGAGAG
Seq A exon
GTAGGTGCTGCGGCCTGTCTTTTCGGACCTGCCCTTCGCATTGTCCACTGTTCTGATCCCGGGCCCTGTCATCCTCAG
Seq C2 exon
CTCAGTAACCTCGGTGCGCTCCTGTGTTTGCGGCCTGTGGCTGGTTTTCCTGCGAAGCCCTATAGCTGACTGCTGACCGACTGGCCGACGGCGCTGGAAAGATGAAGCTGTCCCTGGTGGCTGCGGTGCTGCTGCTGCTGCTTGGCACGGCACGCGCGGAGGAGGAGGACAAGAAGGAGGACGTGGGCACGGTGGTCGGCATCGACCTGGGTACCACCTACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007662:ENSBTAT00000057533:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=PU(5.9=26.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACGCTGACCGAGACATCA
R:
ACAGCTTCATCTTTCCAGCGC
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development