GgaINT0124417 @ galGal3
Intron Retention
Gene
ENSGALG00000001000 | GRP78_CHICK
Description
NA
Coordinates
chr17:10317611-10317954:-
Coord C1 exon
chr17:10317929-10317954
Coord A exon
chr17:10317744-10317928
Coord C2 exon
chr17:10317611-10317743
Length
185 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGG
5' ss Score
7.68
3' ss Seq
TGACCGGCGTCTTTTGGCAGAGC
3' ss Score
6.01
Exon sequences
Seq C1 exon
GGAGACGCGACGGTTCGTGTGTGACG
Seq A exon
GTAGGGGCGGTGGTGGGGCCTATTGCGGCCTGCAGGGACCGGTGGGGCCTGGGGGTTGGCGGTTTTGGGGCCTCTGCGAGAGGGGACTGGGCGCGGTGGGGGAGGGGAGGGCGGGGGCGATGAGGTCGGGTTGGACCGTGCCGCCCATGTGGTGCCTCCATTTTGTGACCGGCGTCTTTTGGCAG
Seq C2 exon
AGCGGCGAGCGGGCGGCATGAGGCACCTCCTGTTGGCGCTGCTGCTGCTGGGCGGCGCGCGGGCGGACGATGAGGAGAAAAAGGAGGACGTGGGCACGGTGGTGGGCATCGACCTCGGTACCACCTATTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001000:ENSGALT00000001476:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=PU(1.8=28.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGGTTCGTGTGTGAC
R:
TAGGTGGTACCGAGGTCGATG
Band lengths:
146-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]