GgaINT0124417 @ galGal4
Intron Retention
Gene
ENSGALG00000001000 | HSPA5
Description
78 kDa glucose-regulated protein [Source:UniProtKB/Swiss-Prot;Acc:Q90593]
Coordinates
chr17:9595616-9595959:-
Coord C1 exon
chr17:9595934-9595959
Coord A exon
chr17:9595749-9595933
Coord C2 exon
chr17:9595616-9595748
Length
185 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGG
5' ss Score
7.68
3' ss Seq
TGACCGGCGTCTTTTGGCAGAGC
3' ss Score
6.01
Exon sequences
Seq C1 exon
GGAGACGCGACGGTTCGTGTGTGACG
Seq A exon
GTAGGGGCGGTGGTGGGGCCTATTGCGGCCTGCAGGGACCGGTGGGGCCTGGGGGTTGGCGGTTTTGGGGCCTCTGCGAGAGGGGACTGGGCGCGGTGGGGGAGGGGAGGGCGGGGGCGATGAGGTCGGGTTGGACCGTGCCGCCCATGTGGTGCCTCCATTTTGTGACCGGCGTCTTTTGGCAG
Seq C2 exon
AGCGGCGAGCGGGCGGCATGAGGCACCTCCTGTTGGCGCTGCTGCTGCTGGGCGGCGCGCGGGCGGACGATGAGGAGAAAAAGGAGGACGTGGGCACGGTGGTGGGCATCGACCTCGGTACCACCTATTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001000:ENSGALT00000001476:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001215=HSP70=PU(1.8=28.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGGTTCGTGTGTGAC
R:
TAGGTGGTACCGAGGTCGATG
Band lengths:
146-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]