BtaINT0072340 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014898 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr7:39701861-39702405:-
Coord C1 exon
chr7:39702250-39702405
Coord A exon
chr7:39702095-39702249
Coord C2 exon
chr7:39701861-39702094
Length
155 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
CAACACCCTGTCCCCACTAGTCC
3' ss Score
4.39
Exon sequences
Seq C1 exon
GTTTGAGAAGATGATTGGGGGGCTGTACCTGGGTGAGCTGGTGCGGCTGGTGCTGGTTCACCTGGCCCAGCGTGGGGTCCTCTTTGGTGGCCACACCTCCCCCGTCCTGCGAAGCCAAGGCAGCATCCTCCTGGAACACGTGGCTGAGATGGAGGA
Seq A exon
GTAAGTGCGGCAGGCAAGGGGGCTGTGACAAAGGGACTCCTGGCTTGGGAGTTGCGGGGGTGGTTTTCCCCTGAGGGAGCTGTGCATGGAGCTTTGGTGGGGGCAGGGAGTTTCTGGCCTCCTTGAGCCCCAAAGCAACACCCTGTCCCCACTAG
Seq C2 exon
TCCCTCTGCTGGGGCAGCCCGTGTGCACGCTGTCCTGCAGGACTTGGGCCTGAACCCGAAGGCCTCAGATGCTGAGTGGGTGCAGTGTGTGTGCATGGCTGTGTGCACGCGGGCCGCCCAGCTCTGCGCTGCTGCTCTGGCCGCTGTCCTCTCCCGCCTCCAGCACAGCCGGGAGCAGCAGGCTCTTCAGATTGCTGTGGCCACCGGAGGCCGAGTGTTTGAGCGACACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014898:ENSBTAT00000019834:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACGTGGCTGAGATGGAG
R:
GGGGTGTCGCTCAAACACTC
Band lengths:
255-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]