HsaINT0076405 @ hg38
Intron Retention
Gene
ENSG00000160883 | HK3
Description
hexokinase 3 [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr5:176888332-176888864:-
Coord C1 exon
chr5:176888709-176888864
Coord A exon
chr5:176888566-176888708
Coord C2 exon
chr5:176888332-176888565
Length
143 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
CACTTCCCTTTCCCCTCCAGCCC
3' ss Score
9.74
Exon sequences
Seq C1 exon
GTTTGAGAAGATGATCGGAGGCCTGTACCTGGGTGAGCTGGTGCGGCTGGTGCTGGCTCACTTGGCCCGGTGTGGGGTCCTCTTTGGTGGCTGCACCTCCCCTGCCCTGCTGAGCCAAGGCAGCATCCTCCTGGAACACGTGGCTGAGATGGAGGA
Seq A exon
GTGAGTCGGGGAGATGGTGGTTTAGTGGGGGATTCTTGGCTTGGAGGAAGGGGATGATACTCTGTTCCCAAGGTAGCCATGGGGCTTTAGTGGGATGGGGAGCTTCTGGGCTGAGCCCCAAACCACTTCCCTTTCCCCTCCAG
Seq C2 exon
CCCCTCTACTGGGGCAGCCCGTGTCCATGCTATCCTGCAGGACTTGGGCCTGAGCCCTGGGGCTTCGGATGTTGAGCTTGTGCAGCACGTCTGTGCGGCCGTGTGCACGCGGGCTGCCCAGCTCTGTGCTGCCGCCCTGGCCGCTGTTCTCTCCTGCCTCCAGCACAGCCGGGAGCAACAAACACTCCAGGTTGCTGTGGCCACCGGAGGCCGAGTGTGTGAGCGGCACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160883:ENST00000292432:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCCAAGGCAGCATCC
R:
CCACAGCAACCTGGAGTGTTT
Band lengths:
247-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development