BtaINT0072359 @ bosTau6
Intron Retention
Gene
ENSBTAG00000033398 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr28:25771112-25774767:+
Coord C1 exon
chr28:25771112-25771295
Coord A exon
chr28:25771296-25774611
Coord C2 exon
chr28:25774612-25774767
Length
3316 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ATCTGTTCACCAAAATGTAGGTT
3' ss Score
4.84
Exon sequences
Seq C1 exon
GTACCGGCACCAACGCGTGCTACATGGAGGACATGAGCAACATCGACCTGGTGGAGGGCGACGAGGGGAGGATGTGCGTCAACACCGAGTGGGGAGCCTTCGGGGACGACGGGGCCCTGGAGGACATCCGCACCGAGTTTGACCGGGAGCTGGACCTCGGCTCTCTTAACCCCGGGAAGCAGCT
Seq A exon
GTGAGTACCCTGTGCTGTAATCTGGGCATCGGCACCAGTGACTGTCCACTCACTCAGGTACGCTTCATACCTGGGAGACTCCTTAGCTGTCGCTTGTTCTCCGTCACAGGGAGTTTAAGAGGCAAGGCGTGTATTGATATTTCAGTTTCACCAGATAGATGAGGAAAGGGAAGCCAAAGAAACTGAGTGATTTCTCCCAGGTCATATCCCTGATCAAATTCAATCCAGAGGCAGGGGAGATACAGCTGTGAACCCGGTGACTCAAGTCCTGCCTTTTTGGCCCATTGGAATGAATGGTCACAGAACAAATCAGTGCAGCCTGAGGAAGCACACATTCCTCATTTGTGTTTCAGGGCTCCCCTGCACCTCACTGTCTCCTAGGCCTCATCGCAAAGCACCTGGTGTGAGTCCCTCCCGGCCTCAGGTCTCATGGAGACTTCCTGCACTCTCATCCCACGCCCACATGTGGTATAAGCCTTCAGGGTCTGCCTCAGCTCTGACTGTATGCTAAGCTCCCTGAAGGCAGCTACACTTGGGAATTCCTTTCCTTTCTACACATAGCGTCTTTACACATTGTTGCAGCTTTAAGTGTTTGTTAAAAAACAAACAAAAAGTGTCTGTTGAATGAAAAAATGTTTGCGATTTTAAAAAATAATTTCAGATTTATAGAAAAGTAGTGAGAATTGTACAACTTTCAGTCAAATTCCCAAACAGTAACATTCGATCTGTGTGTATATGTATATACACAGACACATACAATATACACCTGTATAAAACATACACCTGTATAAACACATGTCTGAATGAAATCATTTTTCTGAACCATCTGAGACTACAATTGCAAATGTAGTATCCCTTCACCCCTAAATACTTCAGAGTATTACCTGAGAACAAGTGCATTCGCTTGTATAACCAAAGTGTAATTATCAAAATTAAAACATTAGCATTTAATCAGTTCTAATATCTAATTTATAGATCTTACTCAAAACTCACCAGCTGCCCCACTAATGTCCTTTATTTAAAAAGAAAACTTGTCCAGGTCCAGGATCACACATTATATGTTGCTGCCGTATCTCTTTCACCTCTTTCAATCTTCTGTAATATATTTTTGCTTTTCGTGGTCTTCAAGAATACAGACCATGTGTTTCACAGCATGTCTCTCAGCTTGTAGCTGACGTTTCTCATGACTGGATTCAGGTGGTGCATTTTCAGCAGGACTATCACACAAGTGGTGTGTGTCCTTCCGGGGCATCAGATCTGGAAGTGTATAATATTTATTCAGTTACTGGTGACACAAATTCAAATCACTTGATTAAGGGAATGTTCGAGAGGTTTTTCCACCACAAGGTTATTCCCTCTGTAATGAATAAGTATCTGGTGAAGAGATACTTCGAGACTATGCAATTATCCTATGTTTCATTAAACTTTTACTCTCTAGTTTTAGCGCCCATTGATGAATTTCTAGATCCATCATTCTCTCTGCAGTTATTAGTTGCTATTCTACTGTAAGGAATACTGTAAGGAAGAGCTATCTCCTCCACTTACTTTCTTATACTAATATGGATTCTTTTATAATTTAATGAGTTATAATTCTTTCCTATCATTATTTTATCATTCCTTCCTATCAATTTTGTTTTTTCAGATTTAGCCAGTGGAAGCTCAAGCTAGTCCCTAAGTGCTTTTGACATGTTCCCATCACTACTGTGAAGTAGCTCAGTCGTGTCTGACTCTTTGCGACCCCCGTGGACTGTAGCCTACCAGGCTCCTCCATCCATGGGATTCTCCAGGCAAGGATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGATCTTCCCGACCCAGGGATCGAACCTGGGTCTCCTGCATTGCAGGCAGACGCTTTACCGTCTTAGCCACCAGGGAAGTTTCTCCTTATACTAATATGGATTCTTTTATAATTTAATGAGTTATCATTTTTTTCCTATCATTATCATTCCTTCCTATCAATTTTTTTTTTCAGATTTAAGCCAGTGGAAGCTCAAGCTTCCTAAGTGCTCTTGACATGTTCCCATCACTCTTTAAATACTTCCTTATTTTCTTGCACAGTAAGATGCTCCAGGCTCACCATGTACTTTCCCAGTCCCAGCAATGGAATCAACCATTTTCCCAAGAAGCCCTGGTGAATAAACATTTTAAGTACCTCCTGGAAACCACTCAACACTAGAAGTGAATATCTGAGGAACGAATTTCTGCTTTTGATGTACTTGTTCCCCAGCACACACCCATTCTGCTGGTGACACAGAACAGTCACAGCCTAAGGAACTGGGTCCACTGTGAGGACTTTAGCATCCTCACACTATTCATTTCACTTAACATAATTCCACTATCCCAAGCTCAGCTGGGATTTCTTTCTATTGTCTTTCTATTTTTGCAGTATTTTAAGACTTTTTATAATGAAATAGATAAAGTTGATTAGGGAACTGGTTGTCCTTGATTTTGTATTTTATTATGTTTGCAGAATAAAAATTATATTTAATAGTTTACTTGGGAAACAGTTAGTAATTGCTTGTTGTATGCAGACTGAAAGTCCACATGTGGGTAACGTGGTGGGACATTTCACCCATATTATTTTGTGTGTGTGTCTATAGATTTTATTTTATTACTATGTTTAAAAATTTTATTGGAGTATGGTTGATTTAAAGTGTTAGTTTCAGGTGTACAACAAAGTGATTCAGTTATACATATATTCATTATTTTGCAGATTTTTTCCCATATAGATTATTACAGACTATTGATAGAGTTCCCTGTTCTGTACAGTAGGTCCTTCTTGGTTATCTATTTTACTCATATTATTGTAGAACCTCTCTGAGGCTATCTAAGCCCAACTAACAGATGCAACATCTTTTTCTCTTGGGCAGAAACGTGTAGGAGTTGGAAAAAATTTCAAATTTGGGTTTGTCATGCTGTGGTTAGTGATCTTGTGAAAGTACCTAAATTCTCTGAAGTTGAGATTCCTTATATCTGAGAGTGGCACCCCACAGTCGAGTGTGATTTGAGATAAAGATTCTTGGACTCAAGCACTTTGTGATCAGAAAAGAATCATAGGTTTCCTCTAGTTCAGTGTTCCTCTTTTATACGCGGGGATAATGCAGCTCCGAGAGCTGCAGTGGGCTCCGAAGGGCACCTCAAGGTGGGGCAAGGACTGAGGCCTCCTGACCCGGAAAGAGGCCTTTCCACTACTTGTGTTCCTGACCATGGGCCATGGCTCACGGGCTTGGGAAAGGAATGCTGCATAACCAAAGGCATTGCTGCTACTTATCTGTTCACCAAAATGTAG
Seq C2 exon
GTTTGAAAAGATGATCAGCGGCCTATACTTGGGTGAACTCGTCAGGCTCATCTTGCTGAAGATGGCCAAGGCAGGCCTCCTGTTTGGCGGTGAGAAATCCTCTGCTCTTCACATTAAGGGCAAGATTGAAACACGGCATGTGGCTGCCATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033398:ENSBTAT00000047474:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]