GgaINT1014884 @ galGal4
Intron Retention
Gene
ENSGALG00000021039 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr6:10446958-10447758:+
Coord C1 exon
chr6:10446958-10447141
Coord A exon
chr6:10447142-10447602
Coord C2 exon
chr6:10447603-10447758
Length
461 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
ATCCTTGCTCCCCATTCCAGGTT
3' ss Score
10.16
Exon sequences
Seq C1 exon
GGACTGGCACCAACGCGTGCTACATGGAGGAGATGAGGCACATCAATTTGGTGGAAGGTGACGAAGGGAGAATGTGCATTAACACAGAGTGGGGTGCCTTTGGAGATGATGGTGCTTTGGATGACCTCCGCACAGAGTTTGATCGGGAACTCGATCTGGGGTCTCTCAATCCCGGAAAACAATT
Seq A exon
GTAAGTGACTCCCTGGGTGATTTGATTTGGCCATCTGAGTTCTCTGAGTGCATTTCTGGCATTTCCCAGGAGTCCCTTTGGAACAGGAATCCAGCTAAGCGAACCTGTTCAAACTTGGCCTCGGTCCTGTCCTATTCAGACCTTTCTTTTCGGGGAAGGGTGGGTTTCTGGGAAGGTGGGTACACCTCTCTGCCTCCCAGGCCAAAGGGCTGCTGCTGCAGTCACTTACATGTCATTGAAAATAGGTTGTTGCTCTGGTTTTTGAATAGTCTTTTTAATTACTTATTTATCTTGAGTAGGAGTTGGGTCCCAGGACCTCAGGAAGGCATCATGTCCACAGCTTAGCTTCTGGTGCCTTTTGTAGATGCTTAAATGTGATCAACCTGCATAAGAACATTCTTGAAGTTGCAGTGGCTTTGGTGAGCTGGTGGACGCCTTCTAATCCTTGCTCCCCATTCCAG
Seq C2 exon
GTTTGAGAAGATGATCAGTAGCCTGTATTTGGGGGAACTTGTAAGACTCATTCTTCTCAAAATGACAAAGGAAGGTCTGCTCTTCAATGGAAAAGTGTCAGCAGCTCTGCTTACTAAGGGCAAGATTGAAATGAAACACGTGTCTGCAATGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039:ENSGALT00000006717:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAACGCGTGCTACAT
R:
TTTTCCATTGCAGACACGTGT
Band lengths:
334-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]