BtaINT0073173 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008139 | HOXA3
Description
Bos taurus homeobox A3 (HOXA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076825]
Coordinates
chr4:69374673-69386774:+
Coord C1 exon
chr4:69374673-69374755
Coord A exon
chr4:69374756-69386128
Coord C2 exon
chr4:69386129-69386774
Length
11373 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CTGCGATTCTCGCCCCCCAGGTC
3' ss Score
9.41
Exon sequences
Seq C1 exon
AGCCGCCGGATGCCGGAAACGGGGAGTCCCTGAGCGCCCGGAGCTAGAGACACTCTCGGCTTCAGCCTTGGACATCTTTCGAG
Seq A exon
GTAAGCGCTGCGTCCCAACTCTTCACCGCGCCGGCCCTCGCACCGGTGAAGAAGTTTACTTTCCCTGGCAGCTGCCACCCCTTGCAGCTAGCTGGTCAGTATTGAAAGAGGTGCTGGTCAATATATAACTTCTGAGGAGTTCCCCTCAGCTGCGCGCCCTGCCAGCGAGGGCTTCGGCGACAAAGCTCTACCCCAGACCGGCTTCGTGCAGGAGGGGCGGTTGCAGAAACCAAAGATGTGTGTTCGTCGGGGGCGGGGGCGAGTGGGGGGCTCAGAAGGGCGTGTGTGTTTCTTCGGGCATGCCTCAGACGAACCGAACCGCTCCACGGAACAGCAGGGCCAAAGCCTACTAGTAGAGGCCACGGGCGCGGCGGTAGCCGCGTGGGCCGCTCTCCTTGTGGACTGTTCACGGCGCCTGCGGAGCCTGGGAGTTCAGCCGTTGTGGTCAGCCTCAGGTCTGCGCGCAGAAAACGTGCCTCGACGCCTTGTAGTTTCTCCTATCGTCTTGCCTTTCCTTGGCAAGAGGGAAGTTGCTGTATTTCAAATGTGTAGACCATCGTTGGCAGCTGGGCTTCTCGGTTTCTTTAGCCGGACTGATCCACTGATCTTCCTGTGGGAAAAGCACGGGTTTTCTGTGTCTCGTCGTTTTCTTTTCCTATTTAGAACAAGAGAAAACTCTTTAAAATTCTTTCCAAGTTCTGGCTTAATTTGTTCTCTTAGTTTGGGATGCAGGGAGGTAGTTACTGTGGTTTATTACCTTGTAAAAGATCCATAAATTTCGTGCCTATTTGGGGGAGGGGCCGCTGGAATAGCTTTCAAAAGCGTGGGATGAAGGAATGGATTTGCTTTGTTCTTTTAGGAATTATTTATTTTTAAAAGTTTGCTGAGTTTTTTTAAAATCTTCTATTCCCTAGGCCTCAGTCTTCCCTAAAATCTGCTCCTACAATAGATATCAGGTTGTTAATTAATTGAAACACTATTCACTGATGCTCTAGGGCTGATAAGGTGTTCTGGATACAATTATTACTTTATCAGATAGGAAGTAAACAGAGTAATAGTAAAGCTGGTACTTTCTCAGCTACTGTATGTTTATTTATCCCAAGTATAGATAGAGCATTTCAGGAATTTGTAACTCAGATGTACTTAGGATTTGCATTTCAGAACATAACAGAACCACCGCATGTGTAAACAGTTGCAGAGGTCTGTGGCCAGGGGTATAAAATGATAATACACATCCAAGAGAACTTGGAGCCCATTTGTACTGTAGTTGCACCCACAGGAAATATCTCATGTTAAATAATGATCTATAACCTGCCCCCCCAACCTCCCCCCCCCACACACACACAGTGGGCTAAGGGCCTTACCTGACACTGAATAGAAAAAACCACTACAGTTAAGTAAAGGGAGAAAAATGTTAAGTGTATTTTTGACGGAGAAATCAGATTACAGTGTTTGAATACAGATATAGCTAATCTGCCAACAGCCTTGCAAATATTGACTAAAGCTCTGTATCCTTGGTCACTTGCTCCTTCTAAGACAACTTTGTGCTATTTTGGCTCCATTGCATGGATCTAGGGCTTGTGTCCGAGCCCTGGCCAGGTTGAGTGGAGGAGTCAGTAAAGGGGGAACTGGCAGCTGGGTTTCCCAACCTGCGCCTAGATACTTGAGCATCTCTATTCTTGTTCTCTGGAACAAAACGGAACCATAAAAGGCCCATAGCCTTGCTTCAGGAAAGTGGGTTTCAGAGTGGTGAAGGAGGACTCTCAGCTGCTGGTTCCCTGGGGGCTTGGCCAGACCAAGATCTCTCTTAGGGAAGCCATTTTCACTTCAAAAGTGAAACTTCCTTTGACTTGTTCAGATTTTTCCCTTCACATCCCACCCAATCACCCCATCCCACTCCAAGTCGTTAATGTTAATTGTTAAACAGCAGTTGAAGCATTAACTGGGCTGTTAATAGAGGTATAGAGGCTCCTAGCTGAAGCTGAGATGCTGCTGGGCCTTTCTGGCGTTAAGGCATTTCTCTGAAGCAGGACCAAAGACTTCTCTCATTGATTTATCGCCTCGGAATTTCGGTTTGCTCCAGACTGCTCTGAGAGTTCTAAAGGGGGCCTCTTCTCATTTTTGAGTTGAAGCCTATGCAGAAACTTTAGTTGGCAAGGAAGGGAGTTTGCCAGGCTATCTGGAGAGCTCAGGGTGAAATTATATGGATGGATGGGGTAAGGGGAGCAGAGGCCAGTGTATTAGTTGTCTGAGTCCTTGGGAAACCAGAGAGTGCTTTTGAAAAGAGCCTTTGGGCCTGACCCCTACCCCCCAAACCTGAGAGAAGCTGGTTTTCGATTTGGGTTCTCACTTTGTAGCCTGTGACTTAGGTCAGAGCTGGGAAGGTTCACATAGGGGTTCTCTCCTAGCTATCCCATAGACAGAACTTTATCCAGCTTAGGCCGGGACTTACTTCCAAGGAATTAGGCCTCCTCCTTTTTTATTGCCCTTCTCATTTGGACACCCCCATGACCAGGCCTCTGCTGAGGGCCTTATTTTCTCACCAGGCGCCTTCTGTCCCTCTGCAGGGGAGAAGGGGAGGGAAAGAACCATGCACAGCTTTCTGCAGCTGCTACAAGTGAGCCCTCATGCTTAGAGAGTCATAGCCAGCTGAAGACCCACTCTCAAGGAACAAAAGAATATGGCATGAGGATCTTACCACCTCAGAGCATTCCCCAAGTTAGAAACAAAGACCTGAAAAGAGGGAGTTTTTAGATGGCTTCTGAAAACGTGAACTGTTGAAGTCAGTGGACAGAGCCCCCAAGCAGAAGGCAGGAGTTGGAGTGGGATGAGGAGGGGGAATGCCAGGTTCCTCATGAGCAGAGTTGGTCCCGTTCAGTTTCTGATGGTGGACACAGAGTTGTCTTTGAGGAGAGTGGACACACTTGTCTGCAGAAAGGGTCTTAGGTTGTCTTGTAGGTTATTTCAAGGGATGCCAGCAAACATTGGTTCTTTTTTTTTTTCCCCTCTCTTGCAGCGACAATTAGATCATTTCCCCTTACATTTTTCATCATTAGAAGCCTGTAATTTCATGTATCACTCAGCTATGCACTAAGGAAATGTGTAAGTGCAGATTTGGCCTGGACACTTGGTCCCTCCAGATTTTGCAACCCTGACCCACCACTCTAGAGCCAAGCATCTCTCTTGTAGGGGGCTCCTATCAAAACCAGCTGGACTTGGAGGAGGTGCTTCGGCCTTTTGTCAGGTAATTATGGGCCTTTTGGGTTTCTCCAGTGACTGTGGTGTATGGTGTGGGTGTGAGCAAACTCCATACAATGGCAGGCCATTAGGGAGTCCACTGAAGAGGCCAGTTAGTACTGGGTTTTCTTCTGGAAACAGGGCCAGCACCTTTTGCCTTTTGATATACTGGCCAGTTGGCCAGGGGAGACTGGAGTGCTTGGGTGTTTTGGGTTCAGCTTGTGTGTAAGTGGGAGACTATAAGGAAAGTTCTTCAGACTGTGAGAATGGGGACAGAATTGCTCTTCCCTTGTGCTGACTCATGTGTACAGAAATGTAAGTGGAGCTAAGTGGCCTTGTGTGATGAGTGTTGGGATGGGGGGAGATGCCCCAGTGTCCTACTGTCCTGGATAAAACTTCCCCATTGCTGGTCAAGGTCCCCCAGTTCACCTCCCTGAAAGCTAAATGTTCTGATTGGAAACGTAGTTCCTTCAGTGATTCCCTATTTCAAATAAAAGGATTTAAGTTGACGTATGACCACGTGAGCACATAATACAGCGCATTATTGTGGCATTTGGAGCGGAGACCCAGACGGGCTTTGCCTGTGATTACGTTTTCTAGATTCTCTACAGAGCGAGAGCTTTCCCCCACCCCCACGCACCCACCTCCTCCTTCTTCCCCTTCTCCGGAGAGTGCTCTCCTAGCGGGTTGCAGTTTTCAGCGCTTATGGAGCGGTTCTGGGCGAGCTAGCCGATGGGACTCCAGGCCACACCGGGAGAATGGAATTTATTTTAAGGTATTTCTGTTGATTGTTCATATCTGGAGTGAGTTATGGCTGTGAGAGAGACAAAGGTCAGGCGAGGAGACCCTGGTTCATGGACAGGACCCTCAGCGCCTCTCTTCCTTTGTTTCTTCCTTAGAATCGAAAGCATTTGAAAGATCCCCAGTGGCGCCTCAGACTGCATTTAATTCCCTGGCAAGTGTTGGGGGGTGTAAAGGAAAGAGCATTTGGGGGCTACTAGGTGGGCCTGGTGGCCTCCAACACTCGAGTGGCTTTGTCCACTGCAGCGGGAATTGAGTCCCAGAAGCTGAGCCCCTGGCGGATGCGAGTGTTGGAGCACTGCCGGCTCCAGCCAAGGTGGCCCGAGCGCAGCTCACAGCTTGCTGGATGGAACTGCCTGGAGAGGGTGGGGGCTGAGTGAAGGAGAAGGGGAATTGCTCCGTTTAGCCGTGTTTGCTGGCTAGGATGGAGGGTGAAGGCTGACCTGGATAGCCAGAGCAGCTGGGGGAGAGAAATCAATGAGTGTCCAGATGCGCTGCCATTTTATTGATGATGCTTCGGGCCACTTTGTTCAGTGTTAGGTGGTTGCACACGCTTTCCCACTTGCCAGACTGAAGGAGCCAGACCCTGAGGACTAGCCATTGTTTGCCCGAGTACCCTTTGCCTGAACAGGGGTGGAGAAGGACAGCTCAAATCTAGGAGAGGCTTGGGCTGGGGGCAAGCATGCTGAATGCCCAGAAGCTCTGTTGTTCTAACATTCAGGAGACAGAGAAAGGAGGGAGCTGGAGCTAGCTGAGCTTCGTAAGACACAAGGCTGGGGCGCCCCCTGTTTCACCCCCAGCCGGCTAGGAGAGTTGGAGAACTGGCCGGTGTGCCCTGGGCTGGAGGGAAGTCTGAAAGCAAAGTCTGCAGAAAGCAGAGGCAGACATCTTCAGAGTCCCAGGAGCGGTGCTGTAGTCAGAATGGGGGCAGATGAGAGTTAAATAGCTTCCAAATTACTGGGAAAGCCCGAGCTAATTGGGCTTTAGGGACCCCATAGGAAGGATGGAAACTCCCTAAAAAGGTGAGGGAAATTTCACTTTCCTCTGCTGAAGTTCTTGGAGCAGAGAAAAGGGATGCCTACAAAGGAGCTGGGAATCGGATCTGTGTCCTGACTTAAAAACAAACAAACAAACAAAAAAACCCCAAAACTTTCCGCACTGGGGGAAAAAAAAAAAAGAAATCAAATCAGATTTCCCCTACTTGAGTGAGATTTACTTCCCCAGACAGAAGGGCTGCTTCAGCCCTCCCCGCTACTGGCCCAGGCACTAACCATGTTTAACTGAGGCCGTTTCAAGTGCTCTAAAACACCCCTTGGAAATAAAATGTAAGCTTTAATTGCTGTTCAATTACTTGTCAGCATTTCATATGATTTATGACCCAGTTCTGGCGCATTTTTGACCCAGTTAAAGACTCATAAATAATATAGTTTCACTAGAAAGAATGAGAGAAGGAATAGAGGTTTGTTAAATGCATCTTTTTATTGTCGCTTCAGTGCCAGCAAGTGGAATAAATATCTAAGGATGGACTACCGAGCTGGTTCTGTATAAAAGTGTACACAGACAGAAGCCAGTAGAGGTATTTATAGAGAACTGGTTGGTTTTTCCCACATGGAAAGAGCCAAAGCCACTCCATCATAGCTGAACTATAGCCATTAAAAAAATAAAGGCTAGTCTCCCCCTTTACCCTCAAAATGCCAACCTCACCCTCAGAAGCAAGCTTATTTCCTCATTGATTTTCTTCCCCAACCTGGGATTTCTGTGCCTTTTGTAGCCAACAGTTATTCCCCACCTTCCTCCCTGGCTGCACAGCCACCCACAGGCTCTCACAGATAAGTTCATAAAGATACTTCTGTAAAGGATAGAAAGGCACCAGGGCACTTCTGATGTTCCAGACACTCTTCTAGTGCTGAAAATATGTTTTCTTCTAGTCTTCATGGGTGAGAGATGGGGGCAGGGAACAGGGCTTAAGAGTACTGGGGGAGCCAAGGGGTCCTCTCCCCAGAGAGAACCTCAGTGGTTTTGGTGGAGCCGGGTGAATGGCTGCGGGATTTACTTAGGGCGCTTGGGTAGGGGCTGAAATCGACAGGCGATATTTTCCTTTTAAAAAAGCAGTAACAAACAAAAATCCTTCAGCTATTATACATTATTATTTTTAATCAATTCACCCATCTGGCTCCAAAGATTAGTCCTTTGGATTTTAGCAGAGAGGCCTGGGCCCCAGCAATCTGCGTGCCAGGTCGCCAGACCCTAGTCTTGAGGTCCGAGCCCCACTTCTGCCCGCTGCCCAGAGGAGGTCCTGGCCCAAGCTCCCGCCCTATCTTTCCCTGGGCTCCCTGCTCGGCGGCTCCCGGCCTCTCTGGGCGCCGGCGGAAAGGTATGCGTCCCGGGTCCCCCAGCCCTCACCTCGGCGCCCCGGGCCGTCCCCTCCCCTGGCAGGTTCTCACGGAGAGCGGGCCTTCCCGGCAGCTGGCTTAGCTGAGAAGGCGGCGAGTCGCGTCAGCAGTTTGGAGGAGAAAGTGCGGGTTGATTATTGACCCACGCCTTCTTTCTTCAAATGCTACATCCGACCCAGCCGGTTTGAAGAGAAAATGCCGCCGAGCGGATTTTTGCGGCCGGCTCTTGCCTCCTACGCTGCCTCGCTCCCCCTTTCAAGTCGCGCTGCAGCAGTATGCCATAAGGAGCAAGTGTTTGCTGTTTTGTGCTCTGTTTACAGCTTTGGGGCGCCGAGTCATAAATCTTGCCCAGCCATAAATGACAAAAACCATTGGTATGCATGAGGCCACCCTGGCCCGGAGTGCTTTTTGATTTCTCCCTTTTCCCTTGGCTTTGTTTTTGCTCTAAGGTGACACTTTGGCTCCCTGACAGTTTAAACATACTACTTATATTTTTAACACCTTCCTTTGAGAAGGACCGGCCGTTGACACCTTGGAATTGCACGAATGCTCCATTTCTCTTTTGCCACACACATATCCTGACAGAGTTCACTTCCGAATCTGGAAAGTTGAGGGAGGCATTAGGAGGGAGAAAGACTATCCTCCTTAAAGTTTTGGCAAAATCGCTGGGCATATTGGGCCTTTCCTCTGCTCAGCGTCCCTATCTGCCACTAATTAGGGCAGAAAATATAGACGCGGTTTCCTATTGGGGTCAGAGGTGTCTTAGCCCGAGAGTGAGCCGCGTGTTTGTACTGTGAAATGGGTACAGAAGGGTTGGACACCTAGAATTCTAACACCTTTGTGTGTACCTGAGCCCAGAGCGGCCCGTTTTACTGCCTGGACAAACCGTATCTCCCCCAGGCTACCTCCCTCCCGGCCGCCAGGATTTCAAGGATTTCCACCTGAAAAAATATAACCAGAAAGCCCAGTTGGCTCTGGGGGAGGACTCCCAAGAAAGGAGGCCCTGTCCCAGCCCCTAGAGACTGGCTTTGAGGTTCTCAGCTTGGGGGTGGCAGGTGAGGTAAACTGCCCAAAGTCTGGGGAACTCTCTTCTCCTGGTTCTCTGCCCCGCAACTGGAAATGTTCAGAGCATGGGGTAAGGTAGTTTCTCAAACGGATTCCAAAGAAATAGAGTCCAGGAAGAGAGCCCCTTTGTGAGAGCCGTTTGTCCTCATTAGCATAATTTTCCTGGACTTTAGTGACGCTTAGGAGCGGGGAGAGGGAGGGCGTTGGGGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCGCTGCCGCCGAGCTCCCCCTCTCGCTCGCCTCCGCCCCATCCCCCACGCCGGCGGCGTCCTCCCCCCCAACCCGGCCGCCTCGGCCTCCCTTCCCGCCCGCCCCCAGCACCCCCACCGCACCCCCCGACCAGACGCTGCTCCGCGTGTAATATTCATAAGAAACATACCCAAGTCGGTGCCACTAGCCCAGGCAGAGCCCCGCGCCGCGCTAGCGCTTATCTCCGGGCCGCGGCTGCTGCCCTCGGGAAGGGCAGGGGGCGGGGGTGTGGGGGAGGGGAGGGTGGGTGGGGTGGGTGGGAGGGGGGGTCCGAGCCGCCCCAGTCCGCCCTGGGCTAGCCGTGCCGGAGCAGCGAGGCGGCCAAGCTCTGCACCGCGACGTCCGGGCCTCAGGGTCTCCCTCCCGCCCGCCGTCTCGGCCGATGCTGAGGGTCGGTGCCCATCCCGCGCCGAGGGGACCCGGCCGGGCCGCCGAGCCGGGCCGGGGGCCGGAGCCCGAGCCTGCGCCCGAGCCCGAGCTCGTCAGAAGTTAAGGTAAGCAGGGCTCCAACCGGCCGCTCTCAGCGCTGAATGGTGGAGTTTACGTCTCGGTGATTTATGGCTGCAGACTTAAATCTCGGTTCAAGAAGAGTTCACAAGCCGGAGCTTCCTTCCCGGCAGTGACTGATACCCTTACACTTCGAGTTCAGGCCGCTTTCCCATCCCCGCCCCCACCTCTTCCCTCTCCCAAGCCCAGCCTGAACTTTTCGGGGTTAGGAAGGAGAGGAAGGGGTGGGCGAGGGGACGCGGGGTCTCTTACCCGCCGTTCCCGTTTGAACTCGGGGTGAGGGCAGGCCGAGGAAGGGGCGGGAGTGGAAAAAGAGAGCGGTGTCTGAAGGAAGGAGGTTGAATTTGGGCAGATCTTCCAGAGAGACAATAGGGCTTGCTTCCTGCAGTCAGTTTAGCCTCAACTCTGTTTCAGTTCTTGCACCTGGGGGTTATTCTCCAGAAACGGAGCTTTTCAGAGGAATCTCCTCCCATCCCCAACCTTTGCTTGGGGGTGCCAAGCAAAGTTTCCTGGCTGGCAAATCTCCAATTTCTTTACCAGGTTGCAAACTTTGGGGGCTGGGTTGGGGTAGAGAGGAGGTTTGTGGATTGTGTGGGCCCCAAGGTGGGCCTCAAACAATAGGAAGGGCTTTGGTGGGTGAGTTCACATTTTGAGATTATGGAGTTTGTTGTTTGCTCTTAGAGGTTTAAAGGTATTTTAAATTATTTTACAAGGCAATGCATAACTTGATGAAAAGACTTAAGTAAGCCGCAGGCGGGTGTAGCCTCTGATAATGGATTAGCAAGTCACTTGAAATATTGCATGTTCAAGATCAGCTTAATTTTGTTTTATCTAATATCTTTCTGTTCAAGTGTCTGGAGTAATTTTCTTAACCTGACGTTTTATTTTACAAAGATACAAGCCCAGTATCTTAAAAATTTATAATGGCAGACATTAACACTGCCAAATGTAATTGGAACTATTTTCAGTGAAAGAACAGGAAACAGAGACATTAAATTGCTATTCTGTTTTAAATTTTATTTTATCCTTTATTTACTTTTGATCATGGGATCTGTAGCTTCCTATCTATTTCCAAAAGAGAAACCGTACAGGCTCAAGATCACATACAATAACTCCGGATAAGGGATGCTGTAATTTTTAATTTTGGTTCTGGAAAATTAATTGTGCCTGTTTTCCAGATGGTGGTCAGATTGTTGGTTTAATAATGAAATCCAAAAGAGTCTATTATTAAAACCAAAATTATAATCATTCACTGGTAGATGCTTATTACACTAATTTTTTTCTAGTTAACAAAGGGTCTGCTATTTCTGGAAATCTTTAATAACTCCAGGGCACAAATACACATAGTTGAGGTATGAAGTGTAAACCCTTTTCTTCATGAATTTGTTATTGTAATTTTCTTAAATGGTCAGAGACTAACATTCTGATTGAGTGGTGGTGGTGGGGGTGACTATATGAACTCACATGAAAGTTTTCTGAGCTGAGAGCTAGAGGTTGACCATGCAAAGGTGAAAACATAAAACAGATTTCACTTTTACAACATGCTTTCTAAATGAAAAGGGATTAAGAAGGCTTTCAGTTGCTTTTTAGCTTTCCAGGTTTGTCCTTTACTTTGTATTTCTGAAGCAGGTAAATAGGCCAAGTAGCACATAACAACAATAACAGCACACAAAGATCAGAGAACTCTGGCAGGATTTTATGGCTTGTGCTTCCATCCCTCGTCCGGAGCCAAATGACCCCCATACATCAAATTACATAGCAGTTTCTAAGACAGAACCTATTATCGTTAAGTTGGAAGGAGAGTTCAAGCGGTGGTCATGGAGATGACACTGGTTTTTCAGGTTCCTGATGTTTTTTTTTTTTTCTCTAATCCATCATGTTTTAACAGGTAGAATTTGATAGTTGTCCTGAATAACAGGACCTCAGAAAGTCCAAGGCAGGAGGGTCTGGGGACTTCTGTAACAGGGGGAAAGAGGTGGGAGTGGCTTGCTGGGACCTGCCTGAGAAATAGGGAGAGGGAGGAGTAAAGAACTGTTCAAGATTTGAGTTTTACTTTTTGGAGAGGGTCTTGTTGTCTGTCTTTTCCCACCCGGAATGTTCCAGCCACCGTTTTCTCTCCCCTTCTTGACCACAGAGGTCTCATTAGGAGGAGGTGGGTCATATCCTTACACAAGGGTAGATTAACTGTCTAACAAGCTCAGCTTCTGAAATCAACAAGGGTCCAGTCGGGCTATTGCCTGAAAAGATATTGTGCGTACCTCTCTTGGGTGCTGAAAGGTCCAAGAAGGGCCTGGATGGGAAGTCACCCCGCGTCATGGGTTCTTTTGGCATATATTAATCTTAAAGAAAATACTGGAGGAAACGTTGGTGACCCAAACTCTCCTTTGCCCCTCCCCATGATCTCCAGAAGGGAGGAATGCAAGGAGGGGAGACCCCAAGTTTCTTCTTCCCTGGAAAATAAGGGATTCGAATCCTGTTCTTTTCTAGCCCATCAGGCCTTTCTCCTTTTGAACTCCAGCCCCGGCTTCCCGACCTCTTTCTCTCCTCCTCTCTCCCTGGAAAACCCCCCAACTCCAGACGCAAGTTAAGCAAATATTTGTAGCTGCCAGTAAATTCCAGCGGCTTTTTATAGCGCGGCTCTCTGCGCCCGGGGCCAAGTCGTGCTGCTAAATATTGCTGACCACTTTTTCTTTTATGGCTTTCATGTCACTTAGCTATTGAGAGTAAGATGGATTTGCGCGGAGCCCTCACGGCGCTGCGATTCTCGCCCCCCAG
Seq C2 exon
GTCTGCGCGGGGCGGCCATTGGCTGCGGAGCGTCACGTGACCGCGGGGGCGTGCCAATGTGCGCCCTCACGGGTGTCAAGCCTCTGTCAGAGCGTGCGATCAAGATCGTGAAACAACGCGATGCAAAAAGCGACCTACTACGACAGTTCGGCGATCTACGGTGGCTACCCTTACCAGGCAGCCAACGGGTTCGGTTATAATGCCAATCAGCAGCCGTACCCGGCATCCACAGCGTTGGGCGCCGATGGCGAGTACCACCGACCCGCCTGTTCACTCCAGTCGCCTGCAAATGCCGGGAGCCACCCCAAGGCGCACGAGCTGAGCGAGGCCTGTCTGCGCACCCTGAGCGGTCCGCCCAGCCAGCCTCCGGTTCTTGGCGAGCCGCCCCTGGCCCCACCGCCACCTCAGGCTGCGCCCCCTGCCCCACCGCAGCCTCCAGCCCCGCCGCAGCCCCCTGCACCCACCCCCGCCGCGCCCCCGCCCCCCTCTTCAGTCTCCCCACCTCAGAATGGCAGCAGCAACCCCACCCCCGCCAGTGCAGCCAAGAGCCCCCTCCTCAACTCGCCCACCGTGGCCAAACAAATCTTCCCCTGGATGAAAGAGTCTCGGCAAAACACAAAGCAGAAAACCAGCGGCTCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008139:ENSBTAT00000010700:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.869
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]