HsaINT0077281 @ hg19
Intron Retention
Gene
ENSG00000105997 | HOXA3
Description
homeobox A3 [Source:HGNC Symbol;Acc:5104]
Coordinates
chr7:27149734-27162261:-
Coord C1 exon
chr7:27162178-27162261
Coord A exon
chr7:27150380-27162177
Coord C2 exon
chr7:27149734-27150379
Length
11798 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TGCGCTTCTCGCCCCACCAGGTC
3' ss Score
10.75
Exon sequences
Seq C1 exon
AGCGCCTGGACACCGGAAAAGGCGATTCCCTGAGCGCCTGGAGTTGGAGACAATTCCTGGTTCAGAATTTAAACATCTTTCTAG
Seq A exon
GTAAGCGCTGCTCCAAAACTCTTCGCCGCGTGGGACTTTGCACCAGGGCGGTTGGGAGGAGTTGGCCCTCCACGGTTCCTGGCAACCGCGGCCTGTTGAAAGAGGTTCTGGTCAATATTTAACTTCGGAGGAGTTTGGAGTTGGATTCCTTTAAGCTTCTTGCCCTGCGAGTGCGGGGCCTCAGGCAGACAAAGAGCCTACCCCAAAACCAGCGATGGGCAGGAGAAGCGGTTGCAGAAGGCAAAGATGGGTTGTGGAGAGTCAGAGGGAGTGTGTTTGTTTCTTCCTGCAAGCCCCAAACAAACCACTACACTGAACTTCAGGGCAAAAGCAAGTAAAGGCCACGGGCACGGGCGCGGCGGCCGCTGCGTGGGCTGCTCTCTTTGTCGACTAAGGCGACTGCGGAGGCTGTGAGTTAAGAAATTGTCGCCAGTCCCAGCTCGCTGTTGAGGAAAACTTGTATCACACTCTTGCAGTTTCTTAGACCATTTTGCCTTTCCTTCGGCATGAGAAAAATTGCTGTATTTCTAACCTTTAGGCCTTCGCAGACAGCGGGTCTTCTTCCTTCTTTCATCAGGGCTCATCATCGGTTCTTCCTACGGGAAAAGCGTGGTTTTCTATGTCTTGGCGTTTCCTTTTCCTATTTGAAACAAGGGAAAACTCTTTTAAATTATTTTCAAGTTCTGACTTAATTTGTCCTCTTAGTTTGGGATGCAGGGAGGTAATTACTGTGGTTTATTACCTTGTAAAAGATCCATAAATTACATGCCTGTTTGGGGGAGGGGCTGCTGGAATAGCTTTCAGAAGCATGGTATGAAGGAATGAGTTTGCTTTGTTCTTTCAGGAATTACTTCTTTTTAAAAAGTTTTGAGATTTTGTATTCTATTTCCTAGGCCTCCAGTCTTCCCTTAAATTTGCTCCCAAATAGATATCAGGTTGTTAATTAATTGCAACATGATATTCAGTCGTGCTATAAGGCTGATATGGTGTTCTGGATACAATTATTTTTTCCAATAGAAGGTAAACAGAGCAATAGTCAAGCTGTGTTACTTTCTCAGCTACTGTATGTCTGTTTATATCAAATATAGATGGAACATTTCAGGAATTTGTAACTCTGTGTATATGATTTCCATCTCAGCAAACAACAGAACAATTGCATGTATAAATAGTTGCAGGAATTTGGGGCCTTGTGTATAACACAATATACACATCCACACGTGTCCAGAGAACTTGGCCCATTTCTCTACTGCACTTGCACCCACAGGAAATATCTCATGTTAAATAAGAATCTATCATACACACACACACACACACACACACACACACACACACACACACGCACACAGTGGGCTAAGAGAGCCTTACCTGATGCTGAGTAGAAAATCCACTAGATTTAAGTAATGGGACAAAAATGTTAAGTGTACTTTTGACAGAGAAATCAGATTGCAGTGTTTGAGTACAGATATATCTAATCTGCCAACAGCCTTGCAAATATTGGCTAACGGTGTGTACCCTTGGTTGCCTGCTTTTTCCAAGCCAGCTTTCCCCCTATTTTGGCTCTGGTGACCAGGACCACAGTATCAGTCCCAGCGCAGGCCAAGTTGGAGGCCGGTGAAGTGAGTGAAGAGGGACTGGCAGCTGGGTTTTTAAAAGGCCCGTAGCTTTGCTCCAGGAAACTGGATTGCAGAGTGGCAAAGGAGGACTGTCAGCTGCTGGTTCCCCAGATAGGCTGCCCAGGCCAAGATCTCTCATAGAGAAGCTGTTTTTTAACCTCAAAAGTTAAATGTCTTTTGACTTTTCAGATTTTTCCCTTCTCATCCCACCAAATCACCCATCCCACCCCAAGTCATTAATGTTAATTGTTAAACAGCAGTTGGAGCATTAACTGGATGTTAGCAGCCGTTTGGAGGCCCCAGGCTGGAGCTGAGATGCCTCTGAGCTTTGCTGGCGTTAAGGCATTTCTCTGAAGCAGTACCAATGACTTATTTCATTGATTTATGGCTTTTTTTTTTTTTTTTTTTTGACAGAGTCGCGCTCTGTCCCAGGCTGGAGTGCAGTGGTACGATCTCAGCTCACTGCAACCTCTGCCTTCTGGTTTCAAGTGATTTTCCCACCTCAGCCTCCCGACTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCTAATTTTTGTATTTTTAGTACAGACGGGGTTGCACCATGTTGTTCAGGCTGGTCTCGAACTGCTGACCTCATGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCCGGACAATTTATGGCTTTAAGAGTTTTCATTTGCTCGACTGTTCCAAGAGCTTTGAAGGGGGCCCCTTCTCATCTTTGAGTTGATGCCTCTTCAGAAACTTGGGGGTAGGGAGGAATTTGCCAGCAATACCTCCAGGTCCCTTTCTAGGGTATCTGGAGAGCTCAGTGTGAATGATTGGTGAGGGGTATGAGGCAGGCAGCAGTAAGAATGAGAGGAGTGAGTTCTTGGGGGTCAGGAGAACGCTTTTTGGAAACCAGCTTCTACTCCTGTCCTCTATCCCCCAAACCTGAGAGAGGCAGGTTTTCACTTGGAGTTCTTACTTTCCAGCTTGTAACTTAGATAGGAGCTGGAAAAGTTCACATGGAGGTTCTCTTCCAGCTACACCACAGATTGAACCTTACTGAAATATTGTCACCAGCTTAGGCCAGGACTTGCTTCCAGGGGATTAGGTCTCTTCTTTTATTGCCTTTCTGATTTGGACAACCCATGAACAAGTTCTCTTATGAAAGGCCTTACATTTTCATCAGACCCCTTCTGTTCCTCTGCAGGGGAGGAGTGAAGGGGAGGAATCATGCACAGCCTCCTGCAGCTGCTATAAGTGAGTCCTCACACTCAGGCATAGCCAGCTGAAGACCCATTCTCCAGGAAAAAAAGAATATGGCCTGAGGATCTCACTAGCCTCAGAGCACTCTCAGAAGTTCAGAAACTAAGACCAGAAAAGAGAAGATTTTTAGACAGCTCATGAAACGGTACAATGTTGAAATTAGTGGGCAATGTCATCAGGCAGAAGGCAGGAGTAGGGGTGGAACCAAGGGTGGGAGCAGCTTATTTGTTTCAGTTAGGTTCTTCCTGAGCACAGTTGGTTCTCTACTGGTTTTCTGCTCAAGATTATTTTGAGAGTTCTGAAGGGGGCTCTTTCTCATCTTTGAGTTGATATCTCTATAGGAACTTGTGTGGGGGTGGGGAGAGAATTTGCTGGTGGACACAGAATTGTCTTGGAAAAGTGGGTGGACAGACCTGCCTGTGGAGAGGGTCCCAGATTGCCTTGTTAACTTAAGGCACTCCAGTGAAGGTTGATTCTTTTTCTTTTTTTTCTTATTTTTTTTGGGGGGGGGGGTCTCTTGCAGAGCAATTAGATCATTTCCTCTGATATTTTTTATGTTTAGAAACTTATAATTCCATGTATCACTCAGTTGTGCACTGAGGAAATGCTTAAGTGCAAGTTTAGTCAGGGCACTAGGTTTCTCTAGATTTTGCAAAACCCGGACCCACCACTCTATAGCCAAGCACATCTTTCCTAGTGGGCTCCCACTGAACAAAACCAACTGGACTTGGAGGAGATGCTTTAACCTTTTGTCAGGTAATTATGTGCCTTTTTGGTGTTTCTTGCGTCTGTAGTGTATGGTGTGGGTGTTAGCAAACTCCATACAATGGCAGGCTGTGAGGAAGTCCGCTGTCCAGGCCAGTTATTTCTGGGCCTGCCCCTTGCCTTTTGATATACTGGCCTGTGGGCCAGAGGAGACTGGGGTGCATGGGTGTGCAGGATCCAGCTTGTCCGTGGGTGGGAGGCTGTAAGGAAAGTTAAATGGATTCTAAAAATGTGAATAGCATTGCTGTAACCCTTGTGTTTGGAGGGTGTGTAAAGAAATATAAGTGGAGATAAGCTTGTATGTCTTATATGGCATTCATGGGAGGATGGCTCCAAGCATCCTATTGCTTAGACAGAACTCTTAAACTCAAAACTGCTGGTCAAGGTTCCCCACCTACCCTCCCCCAAAGCTAAATATTCTGTTTGGAAACCTAGTTCCTTCAGTGGTTCCCTATTTCAAATAAAAGGATTTAAGTTGACGTATGACCACGTGAGCACATAATACAGCGCATTATTGTGGCATTTGGAGCGGAGACCCAGACAGGCTTCGCCTGTGATTACGTTTTCTAGATTCTCTACAGAGCCAGAGCTTTCCCCCAACCCCCACGCACCCACCTCCTCCTTCTCCTTCCCCTTCTCCGGAGAGCGCTCTCTGAGCCGATTGCAGTTTTCAGCACTCATGGAGCGGTTCTGGGCGAGCTAGCCGATGGAAGTCGAGGCTATACCAGGAGGATGGAATTTATTTTAAGGTATTTCCGCCGATTGTTCATATCTAGAGTGAGTTATGGCTGTGAGAGACAAAGGTCAGGCGAGGAGACCCTGGCTCATGGACAGGACCCTCAGCCTCTCTCTTCCTTTGTTTCTCTTTTAGAACCGAAACCATTTGAAAGATTCCCAGTAGCGCCTCAGACTCTGAATTTAATTCCCTGGAAAGTGTTGGGGGTGTAAAGGAGGGGGCACTAGGGGGGCTCCTAGGTGGGCCCAGTGGCCCCCAGTGCAAGGGTGGCTTTGTCCACTGCAGCAGGGCAGGGCTGGAGTCTCAGGAGCTGATCCCCAGGCGGAAAGAGGGTCCAGAAGCCAGGTGCAGGCAGAGGTGGACCGGCTTGCAGGGCTAGATTGCCTGGGAGGGGTGGGGGATGGGTGGGTGAGAAGGGGAATCTCTCCCAGGATGGCGGTGTTTTCAGGCAGGGGATGGAGGATTAGGGGCTGACCTGAGCAGCCGGAGCAGCTGGAAGAGGGAAATCGATGAGGGAAATGTGCAGATGCGCTGCCATTTTATTGATGATGCTTCCAGGCACTTTGTTTAGTGCCAGATTGCAGAGCATGCTTCCCCACAAGCCGGACCCAAGAAGCCAGACCCAAGGATCTGAACCGGAGGGCCCGCCATTGTTTCCCTGAGCACCCTCTGCCCCAGAGGGTTGAAGAAAGACAGCTCAGACCTAGGAGAGCCTTGGGGTGGGGTGAGCATGCTGGATGCCCAGGGGCTCCTTATTCTAACATTCGGGAGACAGAGGAAGGAGGGAGCCAGGATTAGGTTTGGACTTCATCAGTGCGCCTGGTCTGGGCATTCCTTGTGTACCCCCAGCTGGCTTGGAGAGTTCCAGAACTGGCCAGTGGGCCCTGGGTTGGAGGGAAGTCCAGAGACAAGAGTCCTCAGGAAGCAGAGGCAGACATCTCTCCAGCTTCAGAGCCTCCAAAACAGAGCTGTAGCCAGGGTGGAGGCAGATGAAAGTTAAACTGCATGTTTCCAGATTATTGGGAAAGCCCCAGCTAATTGGGCTTTGGGGACCCCACACTCCTGGGAAGGGTGGGAACTCCCTGGAAAGGTGCAGGAAACTCTATTATGCTCCTTGCAGTAGGGAAAGGGATGCTTATAAGGAGTCAGAGGTCGGATGTGCCCCTTTCACTTCTTAAAATATAGATTATTTCTTTCTGTACGTGAAAAAAAAATCAAATCAGGCATCCCCTACTTGAGTGGGATTTACTACCCCAGAACGAAAGGGCCCTTCTGCCCTCCCCAGTGCCGGCCTCGGCAGTAACCAAGTGTTTAACTGAGGCCCTTTCAAGTGCTCTAAAACACCCCTTGGAAATAAAATGTAAGCTTTAATTGCTGTTCAATTACTTGTCAGCATTTCATATGATTTATGACCTAGTTCTGGCGCATTTTTGACCCAGTTAAAGACTCATAAATAATATAGTTTTGCTAGAAAGAATGAGAGAGGGAATAGAGGTTTGTTAGAGGCATCTTTTTATTGTTGCTTCAGTGCCAGCAAGCTGAATAAATATCTAAGGATGGACTCTGGTTCTACATAAAAGCATGCACAGTGAGAAGCCAAGAGCCACATTTATAGAGCTCAGATTGGTTTTTCCTCCCATGAAAGTGCTAAAGTGAGTCCATTACGTATAATGCTAAACTATTAGATATCAAAAAAGGCTAGTCCCCTTCTACCTCGAAATGCCAGCTTCACCCTCACAGGCAAGTACATTTCCTCAATAATTTTCCTCTCTATTCTGTGATTTTGGTGCCTCTTCTTACCCACGATATTCCTCACCTTCCTCCCCGGCTGCACAGCCTTGGAACCGCCAGAGGCCCTCTCAGACGCCTTCAGGAGGACACCCCTTGAATGGTAGAAAGACACCACGGGCACCTTTGCTGCTCCAAGTATTCTTCTAGTGCTGAGAAAATCTTTTCTTCTAGTCCCCCTGGATGAGAGATCGGGAGCCACGGGGATTTGGGGGAATTGGTGGAACCAAGGGGTCCTCTCAGTAAAGAAAAGCTCTGCGGTTTTGGGGGAGCCGGGTGAACTGCTGTGGGATTTGTCTAGAAAGGGCGCAGCGGCGGCGGCTGGTAATTTCTGGAGGTGGAAATCAACAATCGGCATTTTCGCTTAAAAAACAAAACACCAATAGCAAACCAACAAATAAAAACCTTCCGCCAGCATAAATTATTATTTTAAAATAATCTCGCCTACGCTTGCTCCAAAGCCAGTCCTTTGGATTTAAGCAGAGCGGCTTGAGGCTGGGGCACCGACCATCTGCATGCCAGGACGCTGGACCTTCATCTTGAGGTCGGAGCCCCACTTCTGCCCGCTGAGGCCCGCGGCCCAGGAGCCACGTATCGGGGCGGATAGAGGCCCTGGCCGGAACGAAGCTCCCGCCCCAGATCTCCCTGGGCTCCCACGGCTCCTCAGGTCTGGTCCCCGCGTTTTGCCCGGCAGGGTCTTGGCGCCAGTGGAAAGGTATGCTTTCAGGGCGCCCCAGCCCTTGCTCGGGAGCCCTCGGTCCCCTTGGCCCAGAGAATCCCTTCCCCTGGCAGGTTCTTACGGAGAGCTGGCCTTCCCGGCAGCTGGCTTAGCTGAGAAGGCGGTGAGAGTCGCGTCAGCAGTTTGGAGGAGAAAGTGCGGGTTGATTATTGACCCACGCCTTCTTTCTTCAAATGCCACATCCGACCGGGCGGGTTTGAAGAGAAAATGCCGCCGAACGGATTTTTGCGGCTGGCTCTCACCTCCTACGCGGCCAGCTCCCCCTTTCAAGTTGCTCTGCAATATGCCATAAGGAGCAAGTGTTTGCTGTTTTGTGCTCTGTTTACAGCTTTGGGGCGCCGAGTCATAAATCTTGCCCAGCCATAAATGACAAAAACCATTGGTATGCATGAGGCCACCCTGGCCCGGAGTGCTTTTTGATTTCTCCCTTTTCCCCTGGCTTTGTTTTTGCTCTAAGGTGACACTTTGGCTCCTTGACAGTTTAAACATACTACTTATATTTTTAACACCTTCCTTTGAGAAGGACCCGCCGTTGACGCCTTGGGATTGCAGCAAAAGAGAGAAATCTCCATTTCTCTTTTTGCCACACTCGTACCCTTGCAGAGTTTGCTTCTGAAGCTGGGAGCAAAGGAGGCTTTAGGAGGAAAATCATCCACTTTCAAGTTGTGGCAATATTACCAGGCAAATTCGGACCTTTCTTTTGCCCAGCTCAGCGTTACTCCATCCCACTAATGAGGAAAATATGTATATACATATATATAATATATATTATATATATAATATATATTATATATATAATATATATTATATATATATGTATGTTTTAGGAATCCGTTTGAGAAACCACATATTCCTCTGCCCTGCGTGTGTGTGTGTGTGTGTGTGTGTATGATGTCGGTTTCTCTTGGGGTCAGAGCTTTCTCTGTCTTCCCTGTGGGTGAGCTGCGTGTCTGCACTCTGAAATGGGCACATGAGCCCTGGAGATCCGCGTTTCTAAACACCCTTGTTTGTACCTGAGCCCAGAGCATCCCATTTCACTGCTGGAACAAGTACCTGTCTCTCCCAGGACATTTTTCTCCTGGCTGCTAGGATGTCAGCAGTTTCTGCCTGAAAATTTAACCAAAGAGAGCCCAGTTGGCTCTTGAGGGTCTCTAGAGAAAAGCCTTATCCCAGCTCCCCACACCCCCACCCAAAGATCTGTTTGGGAGTTGCAGGTGAAGTAAACTGGGCAAAGTCTGGGAAACTCACTTTTCTTGGTTCTCTTTCCCCTCACCCCACAATTGGAAGTGTCCAGGGCAGAGGAATACGAAGTTTCTCAAACGAATTCCTAAGAAATAGAGCCCAGCAAGAGAGCCCCTTTGTGAGAGCCGTTTGTCCTCATTAGCATAATTTTCCTGGACTTTCGTGACGCCTGGGAGCAGGAGAGGGAGGGCGTTGGGGGGTGGGGGGAGGCTGCCCTCCTCCCGCCACCGCCGAGCTCCCCTTCTCCCTCCGGTCCCTCCCCTCGCCTCAGCCCCATCCCCCACACCAGCCCGCGCTTCCCCAGCCGCCTTGGTCTCCCCTCCCGCCCGCCCCAACACCCCCCACCGCACCCCCGGACCAGACGCTGCTCCGCGTGTAATATTCATAAGAAACATACCCAAGTCGGTGCCACTAGCCCAGGCAGAGCCCGGCGCCGCACTAGCGCTTATCTCCGGGCCGCGGCTGCTGCCCTCGGGAAGGGCAGGGGGCGGGGGTGTGGGGGAGGGGTGGGTGGGTGGGGTGGGTGGGAGGGGGGTCCAAGCCGCCCCAGTCGGCCCTGGGCGAGCCGTGCTGGAGCAGCGAGGCGGCCACGCTCTGCGCGGCGGTGACCGGGCCTCGGGGTCTCCAGCCCGCCTGCCATCTCGGCTGATGCTGAGGGTCCGTGCCCATCCCGCGCCGAGGGGACCCGGCCGGGCCGCCAAGCCAGGCCGGGGGCCAGAGCCCGTGTCGGAGCCTGAGCCCGAGCCTGCGCTCGTCAGAAGTTAAGGTAAGCAGGGCCGCAACCGGCCGCTCCCGGCGCTGAATGGCGGAGTTTACGTCTCGGTGATTTATGGCTGCAGACTTAAATCTCGGTTCAAGAAGAGTTCACAAGCCGGAGCTTCCTTCCCGGCAGTGACTGATACCCTTACACTTCGAGTTCAGGCCGCTTTCCCATCCCCGCCCCCACCTCTTGCCTCTCCCCTAGCCCAGCCTTAACTTTTCTGGGTTGCAGAGGGAAGGAGAGGTGGGCAGGGGACTCGGGGCTCCTATCCGACGAACCCGCTCAGATTTGGGGTGAGGGAAGGCTAAGAAAGAGGAGGGAATGGGAAGAGGGAGCGATGTCTGAAGGACGGAGGTTGAATTTGGGCACATCTTCCAGAGAGACAATAGGGCTTGCTTCTTGCACTCAATTTAGCCTCTTCAACTCTCTTTCGGCTCTTGCACCTGGGGATTATTGTCCAGAAACAGATCTTTGTGGAGGAATCTCCCCTCATCCCCAGCCCTTGCTTGGCGGTACAGAGCAAAGTTTCCTGGCTGGCAAATCTCCAACTTCTTTACTAGGTTGCAAACTTTGGGGGCTGGGTTGGGGTGGGGGGATGTATGAGCTCCAAGGTGGTGGTCTGCTGACCTCGAACAATAGGAAGGATTTTGGTGGGATCCCAGAATCGAATTTATATTTTAAGTTTACGAGGGCTGTTGTATGCTCTTTGATTTTCAAAGATATTTTTGTTATTTTGTAAGACAATGCACAACTTGATAAAAAGGCTTAACTAAGTAGCAGGCTGGTATAACGTGATAATGGATTAGCAAGTCACTAGAAATATTGCATGTGCAAAATCAGCTTAATTTTGTTTTATCTAATATCTTGCTGTTCGAGTGTCTAATTTTCTTAACCTGACATTTTATTTTACACAAGCCTGGTATCTAAAAAATTTGTAATGGCAGACATTGACACTGCCAAATGTAATAGGAACTGTTTTCAGTAAAAGAAAAGGAAACGGATACACTAAATTGCTATTCAGTTTTAAGTTTTACTTTATCCTTTATTTACTTTCAACCATGGTATGTGTAGCTTCCTATTTCCAAAAGAGAAACAATGCTCCAGGGCTCATGATCACTGACAATAACTCTGGATAAGCGATGCTGTAATTTTTAATCGAGGTTCTGGAAAATTAATTGTGCCTGTTTTGCAGATGTTGGTAAGATTGTTGGCTTAATAATGAAATCTAAAGGAGTCCATTATCAACAATGGAATTATAATCATCTACTGGTAGATGCAATACATTATCTTTTTTTTTCTAGTTAACAAAGCATCTAATATTCCTGGAAAACTTGAATAACTCTGGGACTCAATATACATAGTTGGATTGCATGTTAACCATTTTCTTTTGAATTTGTTATAATTTTCTTGAGTGGTCAGAGGGACTAAGATTCTGAGTGTGTGTGTGGGTGAATATTTGAAACTCACATGGAACTTTTCTGTGCTGAGAACTAGAGGTTGACCATGCAGTGGTTGAAAACAAAAAGAAAACAGATTTAACTTTTGCAAACTGCTTTCTAAATGAAAGAGGGTTGAGGAGGTTTTCAACTGCTTTTTAGATTTTCAGGGTTATCCTTTACTTGGTATTTCTGAAGCAGGTAAATAGGCCAAGTAACAAAATATCAACAACAACAACAGCACACAAAGATCAGGAAACTCTGGCAGGATTTTATGGCTTGTGCTTCCATCCCTCGTCGGGAGCCAAATGACCCCCATACATCAAATTACATAGCAGTTTCTAAGACAGAACCTATTATCGTTAAGTTGGAAGGAGAGTTCAAACTGTGGTCATGGAGATGAACGCTGGTTTTTCAGGTTCCTGGAGGGGTTTTTTTTCCCCCTCTAATCCATCATGTTTTAACAGGTAGAATTTGATAGTTGCCCCGAATAACAGCACCTTAGAAAGTCCAAGACAGGAGGTTCTGGGAACCTTCTGTAACTGGGGGAAAGAAGTAAAGAAGTGGGGGTGGCTTGCTGGGAAGTGCCTGAGAAACAGGGAGAGGAAAGGAGTAAAGAACTCTCCAGGATTTTAGTTGTGACTTGCTGGGTGGGGTGTTACTGTTGGTCCCTCACCCTAAACACACACACACACACACACACACACACGCAATGTGTTCCACACAAAGTTTTCCCTCCCCCCTTGGCTTGGCCACAAGGGGTTCATTTGGAGGAGGTGAGTCATATCCCCAACAAGGTGGATTAACTTCCTAACAAGCTCAGCTTCTGAAATCCAGCATGGTTGGATGGGGCAAATTGCCTGAAATTTTTTGTGCAAACCTCTCTTGGGAGCAGGAAGGTCCAAGAAGGAGCTGGGTGGGAAGTTACCCCATCTCAGGGCTCTTTTGGCAAACATCAGTCCTAAAGCGGAGAAAACATTGGCGACCCAAGCTCCCCTTTGCCTCCTCGTTCCCTTCCCAACATTCCCAGAGTGGAGGAGTCTTGGGCCCTCTGGAGGAGGCCAAGGAGCAGAAACTAAGCGACACCCCAAGTTTCTTCTTCCCTGGAAAAGAAAGATCCCAGCCTTTTTCCTTTCTAGCCTATCAAGCCTTTCTCCTTTTGGATCCCGGCTCCTGAGAATCAGCTTGCAGCCCTCACTCATTCTCCTTCTCCCCGGAAAATCCCCCAACTCCAGACGCAAGTTAAGCAAATATTTGTAGCTGCCAGTAAATTCCAGCGGTTTTTTATAGCACGGCTCCCTGCGCCCGGGGCCAAGTCGTGCTGCTAAATATTGCTGACCACTTTTTCTTTTATGGCTTTCATGTCACTTAGCTATTGAGAGTAAGATGGATTTGCGCGGAGCCCTCACCGCGCTGCGCTTCTCGCCCCACCAG
Seq C2 exon
GTCTGCGCGGGGCGGCCATTGGCGGCGGAGTGTCACGTGACCGCGGGGGCGTGCCAATGTGCGCCCTCACGGGTGTCAAACCCCTGTCAGAGTGTGCGATCAAGATCGTGAAACAACGCGATGCAAAAAGCGACCTACTACGACAGCTCGGCGATCTACGGTGGCTACCCCTACCAGGCAGCCAACGGGTTCGCTTATAATGCCAATCAGCAGCCGTACCCGGCGTCCGCCGCTTTGGGCGCCGACGGCGAGTACCACCGACCCGCCTGCTCCCTCCAGTCTCCCTCCAGCGCCGGGGGCCACCCCAAGGCACACGAACTGAGTGAGGCGTGCCTGCGCACCCTGAGCGCCCCACCTAGCCAGCCTCCAAGCCTGGGAGAGCCGCCCCTGCACCCGCCGCCGCCCCAGGCCGCGCCCCCTGCCCCACAGCCGCCTCAGCCCGCACCTCAGCCCCCTGCACCTACCCCTGCCGCGCCCCCGCCTCCCTCTTCTGCCTCCCCTCCTCAGAATGCCAGCAACAACCCTACCCCTGCCAACGCGGCCAAGAGCCCCCTGCTCAACTCACCCACAGTGGCCAAACAAATCTTCCCCTGGATGAAAGAGTCTCGACAAAACACAAAGCAGAAAACCAGCAGCTCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105997-HOXA3:NM_153631:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.878
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)