BtaINT0073256 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003829 | HPN
Description
Bos taurus hepsin (HPN), mRNA. [Source:RefSeq mRNA;Acc:NM_001080241]
Coordinates
chr18:45972571-45979219:+
Coord C1 exon
chr18:45972571-45972640
Coord A exon
chr18:45972641-45979117
Coord C2 exon
chr18:45979118-45979219
Length
6477 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CAGCATGGTGTCTATTGCAGGTG
3' ss Score
8.93
Exon sequences
Seq C1 exon
GTCCCGCCCCGGCCCCGGAGGTCAGCCGGGGAATCATTAACTAGAGGCTGTGACATGGCGGAGAAGGAGG
Seq A exon
GTGAGTCCCCCTGTCCCGGAGACCTGAGCTCTGCCTGGTGCCCCTCCCCTCCCTCTGTGCTGTCTTCCCAACCCTCCACTCCCTTGGAGCCCCCTCTCTCTGGCACCCCTCATGGGCCCACCCCCACCCCCTTCCGAAGCCTCCTCCACCTAATTAACTATTAACCAAATTCTCTGTGGGGCTGGAACACCACCTGCCTCCCGGCCACCCCGTATGACCCTCCTGGCTCCCTGCCTCAGTTTCCCCTCACCCCCCAGTGATTTCTCAGCTATGTCTGGACCTGTCCTTTACTTGGGGTCAAGGCGGGGAAACTAGCTATCACCGTTCAGGACATAGACTCTGGAATGGAATGCACAGGCCTGCCTTTAAAATATATATATAATTTTATTTATTCATTTATTCATTTTTGACTGTGCTGGGTCTTCGTTGCTGCATGCAGGCTTTTCTCTAGTTGCGGTGAGAGGGCTTCTCGTTGCGGTGGCTTCTCTCGTTGCAGAGCACGGGCTCTAGGGCGCTCAGGCTTCAGTAGTTGGGACACATGGGCTCATTAGTTGCGCTTCCCGGGCTCTAGGGTATAGACTCCATAGTTCTAGTACACGGGCTTGGTTGCTCTACGGTATGTGGGATCCTCACATGGAACCCAAGTCTCCTGAGTTGACAGGCAGACTCTTAACCACTGAGCCAACAGGGAAGCCCCACCAGGCTGCCTTCAAACCTTCCTCTGCCACTGATTATTACTGTGCGATCTGGAGAAGTGTCGTCATTCCTCTGGGCTTCATTTCCCCCTGGGTCAAGCGTGGGTTCTAATGCCACCTCCCTACCTACATGAGGTTGTTGGGAGCATAGAACACGCACAAGGCACCAGCTTGGGGCTTCATGCATAAAACACACGGGGTGTCCCAGATGCGGGGTGCCCCAGAGCTGTCATGGCAGAGGTCAGCAGACTTGGAGACCTGGGGCCCAAGACCTCCACCGATCCCAGACGTTCCTCCCACCTCCTCACTCTGTGGGCAGAGCAGAGGGAGGACTTTGGACCCGGTCTGAATGGATGAAGAGAGGAGAAACAACAGAGAAACCACCCTAGGGATGGTGGGGAGAAACCACACCTCCAATTTGACAGACACTCAAGGGTTTATGGAAGCCCCTGGCAGGGGCTCCAGACACCCTGACTCCCTCTTAACCTCCTCCACACTTGAGAGCCAGCTGGAGGAGACCAGTTTGGGGTGGCTCTTTCTTCCTGCCCTCCCCAGCTGGGGCTGACTCTCTCTCTTCTTCCTGGAACCAGGCTAGTTGGTCTCGGTCCCAGGCAGTATCACTCTAGCTGTGAGGCTCTGGACAAGTGGCTCACCCTCTCTGGGCCTCATTTCTTCCTCTGTAAAAAAAAAAAAAAAAAAAAGCAGTACTAATGTCCACCCTATAGGATGGTGTGAGGATTTAAATGCAGGGATAGGCAGGGAGCACTAAGTGTGTTGGCTGAAATGATGGGTATGGATCGCTGGCCTCCTTGCATCTCAGCACAGCTAGAAAATCAGAGCCCAAACCATCCAGCTGTGAAGTGCTAGTTGTGTCCGACTCTTTGCGATCCCAGGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGAATTTTCCAGGAAAGAATACTAGAGTGGATAGCCATTCCCTTCTTCAGAGGATCTTCCCAATGCAGGGACTGAACCTGGGTTTCCCGCATTGCAGGTATTCTTTACCATCTGAGCCACTAGGCTCCCAGTGGCCTGGGAGACAGCACTGCACCCTTGTTGAGGAGGGGGGTGGCAGAGCCTTGCACCTTTGGAAACCTTCCTTCCTGGAGCCCACTGAAGGGACTCACCAGGCCTGGGGCCTATGGGGGAATGAACCAGAGAAGCACAGTGGAGTGTGTCCAGAAGGACGGCCAGGGACTGGTCTGAGGACAGACAGCCAAGGCACAGTGAGCTTCAGTACATCTCCAGGCAGCTCAGTCCTAGTCTTGGGAGGGGAGTCCTACCGTCATGGCAAACCTGGGCTTACTTGCTGGGTTGCCTGGTGTGGGTGGCTGAACCGCTCTGGGCTTCCTTTCCTCATCTGTACATCGGGGGTGGTGATAATGATACATTCCTCATTGATAGTTTGCAAGGATTTCAGGAAACTGCAAGATGGGGTTGGGCTCCCTAGGTGGCGCTAGTGGTAACGCCTGCCAATGCAGGAGACATGGAGACGCGGATTTGATCCCTGGGTGGGAAAGATCCCCTGGAGGAGGGTATGGCAACCCTCTCCAGTATTCTTGCCTGGAGAATCCCGTACGCAGAGGAGCCTGGCAGACTGAAGTCCATAGGGTCAGAGAGAGTTGGCCACAACTGAAGCAACTTGTCACTGACACACATCCTCGCAGGATGGGGTTAGGACAGGCCTAGGGTTGGTGTGTCTTCTGAGAGCTGCAGTTATGCTAACATTTGTGTTACCATTCTGCTGGTGAAGTGCGCCCAAGGTGAGGTTCTTGGTGCTACCTGGGGACTCCAAATCAGAGGCGGTGATATCTGAGTTGATGCTCAGAATGAGGCAGGAGTAAGTAGGTGTGCCAGGCAGAGAGACGAGCAAGGCTAACAGCTGGGGGTGACAGTCTGCCAGGTGTATGGTGGCATGTAGCTAATTCGGGATTTCTGGAGGTGAAGTTGGAAATGGAGCTGGGCGGGTGATGAGACACGCAGGCTGGACCAAGTTTTGTTAGGACTCCAGTAAGAAGCCGACCCATGCCCGGGCAAGGCCGGCTCTCTCCACAAGATGGAGCTGGTGGTTATTCTTCGTTTCTTTTTTTTTTTTTTTTTTTTGCCTTGTATAAGTCCTGTCATTTTGGTTGCTTTTTGGAAGCTCTATCAATTGTCTGGTAAGGACCCTTATGGCTGTCTGGGGATTGAGGAAAACATGTGCAACCTCCAAATCTCTGATAGCTGTGCTTACATCCTAGAGGGCCTGGCACCTTGGGCTGAGGGCCTTAGACTGTCCTGAGAGGCACTGGGGAGCCATGGAGGATTCTAGGGACAGGTTGGATTTGCTGTTTGGGAAGACCCCCCAGGTTTCCATGTGGAGGCTGGACCAGAAGGAGAGACTGAGCCCAGAGGTTGGAGGGGGTTGGGGCAGGGAAGGAGAGAGTGGGCAGGAGACCCTCAGGAGGCCTGAGCCATGGGGAGAGGGAGGTGTTCTGCACACAGGGACAGACCTGCGGGTGAGGACCTCTGAGATGGGACCTGGGGACTTAGGGAGACGTGGAGGCCAATATGGAACCTGGGAGATGTGACGGAGTGTGGTGATTCCGGGGGGAGGCATCTAAGAGGCTGCAGGACCCCCAGCCTAGGACTAAGCAGAGTCCAGAGCTGGGGACAGAAGAGCAACACAGTCTGTGGGGGTGGAGCGGGGAGGCATGAGGGGAAGGAGGCCAGGGCCACCCTGTGAACCCCAGATTTCAGAGAGCATGTGGAGGGTCAGGAGATTGAGAAGTAGTAAGCAAATCGGACAAGGGTGGTGTCCCCGAAATCAGATGGGGAGAGAATTTTGTTCAGGAAGTTGGAGTTGGGTACACGAGGACAGACACGGAGCTGTTTGAGTGGAGTTTCAGAGATAAGGAACCAAGGACATCACTTGGGAGGGTTTTGCAGCCAAATGGTGGAGGCAAAGGAACTGCCTTGTGAGGAGACAAGGACAGCCTAGTGCCCGTGAAGGAACAGGGAGCGGAGCCTCAGGAGGATGCTCAGAGGTCCCAGCTTATCAGGCTCTATTTCTCCGAGGAATCACACCAGGATGCTGCCTATCATGCAGTGAGGACACTTCCTGCCTTGGCAAAGATATGCAGTCAGGATGCCTCTCTGAAGAACCTGGGTGAGGACGCTTCCTGTCCCACCAGAGGCACTGTTTGGGGGTTGTCTGAAGTCTCCTGAATCACAGGGCATGGAGCAAGTTTCTCCTCTCACCTTAAGTGACACAAGGTGGCCATGCTTCCTGCCCCAGCTGTCATGCCAGGTCCTCTAGCTGGGCTCTGGGTGGCCCAAAGCTCCGCAGGCATGTCTGAAAACAAAGGACCCTGGACCAGCCTAATGGCTTCAGGAGCCAAGACCTCCCAATGAAACCAGGAATATGGTTGGAGACCAAGGTGGGGACGGGGTCCTCCCTGGTGGCTTAGTGGTTAAGAATCCGCCTGCAGTGCAGGAGACCTGGGTTCAATCCCTGGGTTGGAAAGATCCCCTGTAGAAAGGAATGACAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGCAGAGCCTGGAGGGCTACAGTTCACAGGGTCGCACAGAGTCGGACACAACTGCAGTGACAAAGCAACGGCAGCAGCAAGGTTGGGACGGGGCCTGAGAGGCCCCCTCAGGGAGACATGGAGGGGTCAGCCAGCCGGAGCAGGGCTGAGCTGGTCCGCCGGGGCCTCTTTGGAGGGAGGCACACCTGGACAAGAATGGCTGGGTTCTCAAATTCTTAAGACACTCAGACAATAGCCATTACAGGAAGGTCCTGGACCACTCCCCGCTCCTTTCTGGGTGCTGGTCTGGCCCTGTGCCCATCAGCCATACTGCCGTAACCCAGATGGCAGAACTGGAAGGTCCTGCAGATGCCAGGGGCAGTCGGGTGCACGCCAGGCCCAGCGAAGGCTTTCAGCTGCCTTTTCTCTTTGGTTCCCCCCATCCCTAGCCAAAGGATTGGCTTTTCAGCCCCAGGGTCCCTGTTGCACTGGGAATAAAATTCCTCTTCTCCTCAGGCTGCCAGGTCTCTCCAGCTGGCCCCAGCCTTGGCCCCAATGCCTTCCCCAAGCTCATGCCATTCTGGCCACATCAGTGGCCTCTCTTGCCCTCTTACCCACCATGCTTGTTCTGGCCTCAAGGCCCTGGCCTGTGTTCTTCTCTGCCCACTGTGCTCTTCCATGAGAGCTCTTTGCTTGGCTGGCCTCAGCCCTCAGGTCTCAGCTCAAAAGCTCCTTCTTGGGGAGGCCCTTCTTGAATACCCCACAGAAGAACCTGCTGCCTCCTCTGCTATCATTTTCTTTATAGACTTGGCCATGTTCTGAACATGATCGAGTTCATTTACTTGTTTGCTTGTTTTGGTTTCCCCCTCACTTTCCACACATGAGAATGTGAGCTCTGTGAGAGCATTTCTGCTGTCTTGTTCAGGGATGTGTCCCCAGAGCCTAGAATGGTGCCAGGTACACAGTGGATGCTCCATAGGACCACAAGTGAATAAACCCCCGTTTTACTGATAAGAAAACTGAGGCCCAGAGAGGTGAAGGGAGTTGTCCAAGTCCACACAGCTATAATGATTTAAAAACATTTATTGACCAATAAAAATGAAAAAAAAAAAGCATTTATTGAGAACCTGCTCTGCGCCAGCCACTATAGCACAGAGAGGGTGGCAAGGCTTAGTGGTTATACGCCTGGATCCCAGTGCCAAATCAGTACCACCTCTTCCTGGCTGAGTCACCTTGGGCAGGTGGCTCCACTTCTGTGAGCCTCCGTTTCCCCTGTCTGAAAAATAGGAATCATAACTGAGACAAGGACTGAATAATTTAATACAGTCAGAGCAGTGCTTGGCACATAAGGCTATGATAAGAGTACAGCTCTTAATTATTTGAAAGAAACTTCAAGTATTATTTTTAGAGGTGAGTGCTAGGTGGATGCCCATTAAATAGATGAGGAAGTTGAGGCTTCAAAAGGTGATAGTACCTGCCCAAGGTCCCATATATAGCAGTGGGTAAGGCCAATGTATGTATTTTTTAATTTGGCTGGGCCACGCAGTTTGCGGGATCTTAGTTCCCCAACCAAGGATCAACCCTGAGCCCTCAGCGGTGAAAGCATGGAGTCCTAACCACAGGACCACCAGGGAATTCCCAAGGCCAATATTTTTAAGTGAGGCTGACAAAATTCCAAATGTAGGTTCTCAACCTCTGGGGTCAATTTGACGTTGGAGCTGGGTCCTTGGGGAGAGGTCTGGTTTTGGGGGGTTCCCAGGGACAGAGGATCTGGAACAGCAGAGAGAAATGAGGCAGTGAGGAAATGACAAACAGCAGGGAAGAGAGCTGCCAAGAGGGCAAAGGTCAGGGGTCACAGCCCCCAAGAGGCTCCAAGAACCTCTGGGAAAGTTAGCAGAAGTGAGAGGTCCAAGAAGGAGATACAGAGCGCAGCGTCATTGGGAAGGAGAAGTCCCTTCAGTGCCAGGAGTGTGGGCAGGGAGGGTGGCAATTGTCCCAGCCACACCCCTTCCCAGCTGGAAGCCCTGGGGGGCTGGGCACCCTTCCCGCAGGGGAGGGACAGGCCTGCCAACTGCTCGTCCCAAGAAACTGGACCCAGGGCAGGGCAGGCTCGGGCGTGCTAAGTTAACCCTGGGGTGCAGGGCAGAGCTGGCCCCTTGCCACAGTGAGGACAGACCTGGCAGTGGCCCCAGCATGGTGTCTATTGCAG
Seq C2 exon
GTGGCCGGACTGTGCCATGCTGCTCCGGACCCAAGGTGGCCGCTCTCACTGTGGGGACCGTCCTGCTCCTGACAGGCATCGGGGCAGCGTCCTGGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003829:ENSBTAT00000004986:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development