MmuINT0078851 @ mm9
Intron Retention
Gene
ENSMUSG00000001249 | Hpn
Description
hepsin [Source:MGI Symbol;Acc:MGI:1196620]
Coordinates
chr7:31894110-31899763:-
Coord C1 exon
chr7:31899697-31899763
Coord A exon
chr7:31894212-31899696
Coord C2 exon
chr7:31894110-31894211
Length
5485 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CAGCTTGGTGTCTGTTGCAGGTG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GTTCCGCCCCAGCCCAACAGGTCAACCTGGGAATCATTAACAAGAGTCCCTGACATGGCGAAGGAGG
Seq A exon
GTGAGTCCCCCGTCCCTGAACCCCAGCTTCAGCCCTACCTGGCACCCCTCTTCTGTTTCGTCTCCCAGCCTGTACTCAGGTCTTGGTGTCCTGTCAGACTCAAGACCACCCGCTCAAAATCCTCGTCTATCTGATTAACTATTAACTGGCCCTTCTGTGTGGCTGTACCTCCCCGCTACCCCATATGACCTTACTAGTGCCTTGCCTCAGTTTCCCCTTAGGTCTCAGGGATTTCTCAGCTAACCAACAACATGTCATCTTCTGGGGGCTGAGGTGGGGGCTGCTGCTGTTGCCATCTCTGTTAAGGGTGTAGAGCTAGTCAGGTTGTTTCTGCTGTCTTTTACTGTGTGATCCTGGGTAGGTAACTTCACGTCTCTGGGCTTCAGTCCACCTTTCCTTGCAGTCAAGTATGGATGGATACTAATATTCCCTCCATGAGGTGTTTGGGATCATGGAACACACAGGCAACAGCTTGGGCCTTGGGGCATGAAATACGTGTTGTAACCCAGAGGTGTTCTGATTCAGGTCAGTCACTATGGAAGCCCAAGAACCAAGGACCCAAGACCCCTCCAAATCCAGGCATATAGTCCTTCATGTCAGGGACTCTTGGCTTTGTGGGCAAAAGAGCAGAAGGGGGACTTTGGACTTGACCTGGACGGATAGAGGAGAGAGACAGAAAAACCACCCCAGGCGTGACCGAGACAGCAGCTCACACTCCTTCCCTACCTTGTCCGTACATGGGGACCAAATGGCTAATCAGGGGCAGTCCCCACCGCACTCTCTGCCACCACCATCCTTGACTGCCCTCTAAGAGTCAGGCTAGCTGATTTCAGTCCTGGGCACTTTCTAGCTGTGTGGCCTTGGACATGGCATCCTGTCTAATCATCTGTTTTCTTTGTTAAGTGGAGATGGTCACTATGCGGGGTGGGGGATGGGGGGAACTCAGTGGGAAGCAGTGAAGGTATGGGCCCAGGGATAAGCACCGGTGTCTAGGCTCCTAGAATTCAGTGTCTGCTTATAACAACTCAAACTCTAGAGATGAGCTGTGGGCCTCTGTGAACCAGGCTCCCCTCACCTTGTGCTAAGTGGTCATCAGGTGATGGGCAGAGCCTGATCCCTTTGGGACAGTTTTTATTTTCCTGTGGAGTTGATGATTGACAAGAGATATCAGGGCTGGGGTCTATGAGACAGGGAAGGGAAGGAGTATCTGGATGGAGAATGATGAAGAAGACACAGAGCATGGTCCCTGCATCCCTAGGCAGCTCTCTGTGCTGGGTGAGGGCAGCCCTGGGAAAGGTGACGGGCTGGAGATGACAGCTCCATTCTCATCAACTGTGGCATGGATTGAAGGGATTCAAAGGACAGTAAAGTGGGTGGTGTGAGAGCCCAAGAGCCTCTGCAGCAGCTGCTGATGGTGTTTGTGAGACCATGATGGGCATGGAAGTGTGCAACACTCTGGGCTCCCTGTACTGCTGCTGGGGTCCTGGAATTAGAAGGAGTGATCAGGGAGGAAGGAGAGAGGGAAGAGGGAGGAAGGAGGCCATGCCAGGCAGGGGAAGATGGAGCAGGGTGCTCAGGGTAGGTGTTTGATGGAGATGGTGCCTGTGGCTGACCCACCTCAGAAGTGTCCTTGGCAGAGTGGGGTCTCTCCACAAGGTAGTACTAGAGGTTCCTCTAAACCTTGTTCTTTTTCTTTTACTCCTGAAATTATGAGGATCAAAGCCAGGCCCATATACATGCTAGGCAAGAGCCCTACCACTGAGCCATGCCCCCAGCCCCTCACTGGAGGATTCTATGCAGGGGCTCTACCACTGAACTATGCCCAAGCCCCTAACTGTGGGATTCTAGGCAGGGTCTACCACTGAGCCACGCCCCCAGCCTCTCACTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCATGCCCCCAGCCCCTCACTGAGGGATTCTAGGCTCTACCACTGAGTCGTGTCCTTAGCCTTCTTTTCTTCTTGTTTTCTTCTTTTGTTTTGATACTTAGTCTCACTAAGAAGCTCAGGCTGGTCTCAAAGTTAACAATCCTTCTGCCTCCGCCTCCTGAAAAGCTGTAATGACAGGCTTCTAATCAGCAACTTGTGAGTTTTGTGGTTTAGGATAATCTGTGGAAGTTGTTTTAGGTGTTTGCTAATGACCAATGTATATCTGAGAATTAGAAGAGACCTATATGGTCTCTAAAAGTCATGCTTATTCTGATGGGGGCTGGAAATGCTGGGCCCGGGCACCACAGAGGCCTAGGGGAACGTTCCTCATAGAGAAAGGACCACTGGGGTTCACATTTACAGTTCCCAGGTTTCTGTGTAAAGGGGCCACCGGGGAGATGAGCCAAAATGGTATTAAGTACACACAATGGACGGTGGGGCTTGGAGCTGGCCAGCCAGAGCAGGAAGTGATGAGCAGATAAAGGGAGGTCCTGGGCTGAAGGCTCCTAAGACAGCTGCCTCTGTGTGGAGGAGTGGAAGTCCCAGGATGAGGGCTTCTGAGGGCAGGGCAGAAAACCTAGGGATGAGGGGGATGAAGCAGGACTGCTGTGGGGAGGGGAGGAGGGCCTGGGGATGAGGGGGATGAAGCAGGACTGCTGTGGGGAGTGGGGGAGGGCCTGGGGATGAGGGGAATGAGATGGACTGCTGTGGGGAGGGGGGAGGGCCTGAGAAGGAGGGGGATGGACTGCAGGGGGAGGGAAGGAGGGCCTGGCAAGGAGGGAAATGTGATGGACTGCTATGGGGAGGGGAAGAGGGCCTGGGAACGAGACAGAGCTACTACAGGAAGGAGAAGAGGACCCTGGGATGAGAGGCTGACACAGGACTACTATGGGGAGGGGAGGAGGGGGGACAGGCTTGGGACAGCAGATGTGTTGAATGCAAAGGGAGAAGTGTGTAGAGGCGGCAGAAGCCCCGGGGCCTAGTGTGGTGCTCGGTGCTCGGTGCTAAGGTATCAGGAGTGCCCAGTTCTCATGCTATTTTCCTCTGTAAGTGACACTTTGTCTTAACCCACTAACAGAAACTGCCCTGGCAAGATCCTGAACCACTCCCTGCTCTCTTCCTAATGCTGATTTGGTACTGTGACCATTAGCCATGCTCTGGGAGACATGGGTGAGAGGGCTGGGGCTCTTGCAGCCTCCGGGGTACTTTGCAGAAGGTTGGGGTCGGCACAAGGTTTTCTTAGCAGTTATATTCAGGTGCTAGGATTTCTGGTCCACCAGGGAGGACATCCCCTTCTCTCTAAGCTACTCCTGCCATGCCTCCCATAGCCTCCCCCAGGTCTCGGCACTCCCACTGTTTGGTGTTGTAGCCCTCTAACAGAACATCCTCAGTCTTGACTGCTAGTCTTAGCCGTGCAGTTCCTCCGACGTGTGGCTCTGCCCCTTGTCATCTCTGTTTGCTGATCTCAGATAATCTCTTCCTGGGGAATTTCCCCATTTCCTTCAAAAGCCCCACTTGATGCTTAACCCTACATTGCTTAAAGGACAGATGGCACAGAGCTTTATCATACTGACACACTGAGGCTCAGAGAGACAGTGACAGTTGCCCATAGCCTCACAGCAAGAATGGCTTATCAGTGTTTATCGAGGACCTGCTGTGTGCCAGGCACACTGGCACAACAAAAGGCAGTTTGGTTTCTTGGGCAACTACTTTGGAACCTGGATCTCAGTGTGCCCGGGGTTCAGGACATGGCCGCAGGTCGAGTCACTGGAGATTCGTGACGTGATCTCTCAGAGCCGTGAGAAAAGGGAACCGTAATGTGGGTCGGAGCTAGAGACGACGCTGGGCACATGGCAGGTGGCAGCCGGGACTTGGGTATGAGGATGTATTTAAAGAACTCTAAAGTCATTTAAAAAGTGAGTGCTAGGTGCATGCTCATTTAACAGATGAGGAACCTGGGGCTCACAGAGGAGGTTCCACTTGTTCAAGACCCCAACCTGGAAAGGGTAAGGCCGCTATTTTATATTTTATCCTTTTTTTGTATATTTTTAATTTTCTATATGTGTGTGTCCATGTGCCCATGTGTATGAGTATGTGTATGTGTGTGCATGTGGGGGGGTGTGCACATGTGTGTATGAGAATGTGTATATATGTGTGCATGCACATGCGTGTGAGCATATGTGTGTGTATATACATGGGATGTGCATGTTCACATGTGTGTATGTGTATAGATGTGGGTGTGTTTGTGCATGCACATGTATGCGTATGAATACATGCATGTGCCTGTGTGGATACCGGTGTACACATTGGAGACGGCATGAAGAATCTTGTATGTCCTGCCCTATCACTCTCTGTGTATTTCCCATGATCTGGGGTCTCTCACTGAGCCTGCAGCTAGGCTGATGGCCAGGGAGCCCCAACGACCCTCCTGTCTGTCCACCCCAACAGTGCAGGGCTTAAAGACCTGCTCCACCACACCTGGCCTTTTACACAGTGCTGGGAACCTATCTCTGAATCCCACACTTGCCCAGCAAGTGCTCTTACCCATGGAGCCATCTCTCCAAGGTCACTATTTCAGAGTGGGGTTACCCCGCATAGTGCGATGCCTGGCATTGTAGCACTTAGGAAGCACAGACTAGCCTGAGTATCATAGGGAGACCTTGTCTAAGCTAGTGGTGGTGCATGCCTTTAATCCCAGCACTCCAGAGGCAGGGGCCATTGGATTTCTGAGTTGGAAGCCAGCCTGGTCTACAGAGAGAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTTTTGAAAAGCCAAAACCAAACCAGACCAAAATACAGGCAGATATGGTGACACGTGACTGCCATCCGAGCACTAAGGGAGGCAGGCAGGCAAACTCTCACTAGTTCGAGGCTAGCTTGTACATTATGGTATGTTTGATGTCAGCACTGTTAGGTAGTAAGACCTCATCTCAAAATACAAACCAACCCCCCCCCCAAAAAAAATCAAACCAAAAAAAACTTGGGTTCTCAAACTCCCAGATACAAATTTGATCTTGGAACTTGTGAGAATCAGGTCTTGGGGTTACCAAGAGGGTAAAGATCAGAGGTCACAGGCACCTTAAAGTTGTAAGAACTTCTGGAAAGGTTATCAGAAGAGAGGATCTGGGGACAGGCTGGCCGGAAGCAACAAGGGATATCCAGAAGTGCCTTGTCATCGGAAAGGAGTGGCCGCCAGCACTGGGGGGGGGGGGGGGCAGGGGGGAGCAGGAGGCCTGGCCATGCCCCTTCCCAGCTGGAACCCTTGGGGAGCCAGGCACCTGGCAATCCACACGACAGGAGAGAGACAGCCCTGCCAGCTGCCCAGCCTTGGGAAATGGGGCTTAAGGTACCACAGGCCCAGGCCCGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGCATTCCCGGGCAGGGGACTGGCCCAGTGCCCAACTCTTGCTGTGCTGAGGACCGACCTGGCAGTGGCCCCAGCTTGGTGTCTGTTGCAG
Seq C2 exon
GTGGCCGGACTGCAGCATGCTGCTCCAGACCCAAGGTGGCAGCTCTCATTGTGGGTACCCTGCTGTTCCTGACAGGCATTGGGGCCGCGTCCTGGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001249-Hpn:NM_008281:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: