HsaINT1015878 @ hg38
Intron Retention
Gene
ENSG00000105707 | HPN
Description
hepsin [Source:HGNC Symbol;Acc:HGNC:5155]
Coordinates
chr19:35042453-35049391:+
Coord C1 exon
chr19:35042453-35042522
Coord A exon
chr19:35042523-35049289
Coord C2 exon
chr19:35049290-35049391
Length
6767 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CAGCATGGTGTCTGTTGCAGGTG
3' ss Score
9.07
Exon sequences
Seq C1 exon
GTCCCACCCTGGCCCAGGAGGTCAGCCAGGGAATCATTAACAAGAGGCAGTGACATGGCGCAGAAGGAGG
Seq A exon
GTGAGTCCCCTTCCCTGAGCCCCAGCTTTGGCTCTGCCTGGCGCCCCGCCCTCTGTGCTCTTTTCTCTACCCTCTACTCTTCGGAGCCCCCTCTCTCTGGGCACCCCTCCCAGATGCATCCCCACCCCTGTTAGTCCTCCTCCACCTGATTAACTATTAACCACATTTTCTGTGCAGCTGTGCCACCACCAGCCTCCCTTCTACCCTATGTGACCTTCCTGGCGTGCTGCCTCAGTTTCCCCTCATCCCCCAGTGATTTCTCAGCTAACTCTGGACTTGTCCTCTGCTGGGGCTGAGGCGGGGAAGCTGTAGCTGTCATGGTTAAGGACACAGATTTGGAGTGAAACACACAGGCTTGCATTTGAATTTGCTCTTGCCATCTTTTTTGCTGTGTGATCTGGTGCAAGTGACATTATTCTTAGGGCTTTGGTCTCCCTCTGGGTCAAGCATGGATACCAGTCCTCCCTCTGTGAGGTTGCTGAGTGCATGACACACACCAGGCACTGGTCTGGGGCTCTGCATATAAGACGCATGCCATCAAGCAGAGCTGTCATGACAGAGGTTGGCAAACTCGGAGTCCCAGAGACCCAGGACCCCCACCGATCCCAGACATTCCTCCACCTCCTGGCTCTGTGGGCAAAAGAGCAGAGGGAGGACTTTGGACTGGGCCTGGATGGATGGAGAGGGGAGAGACGGCAGAGAAACCACCATAAGGATGAGAGAGAGAGACTGCGTCATGGAGTTGCTGGCCCTTGGGAGTCTCTGGGCAGCCCCCAGCTAGCCTGGCTTCCTTTCTACCTCTCACACATGGGACCCAGCTGGAGGGGCGCATGGAGGGGCGTCCTGTTCTTTCTGCCTTCCCCTAGCTGGGGCTGACTCCCTCTCTTCTTCCGCAACCAGGATAGCCGGGCTCAGTCCTGGGCAGTAGCACTTTCTAGCTGTGTGGCCCTGGGCAGACGGCGTGTTCTCCCTGGGCCTCCATTCTCTCATCTGTGAAATGGAGAGGGTGACAGTGCATGTCCAACAGCGTGGGGCGAGGCCTGAAATGCCAGGATGGGCAGGAAGCACTGAGCGTGTTGGCTGAAATGATTAGTTCAGATCTCTGGCCTCCTCGGGTCTCGGCACAGCTGGCAATTCAGACCCCAAACCAATCAGCTGCAGTCCAGAGGGAACCCAGGCTCCCAGTTACTCAGGAGAAGGCATTGCACCCTAGCCGAGCAGGTGGATGACAGAATCCAGCTCCTTGGGGACAATCTCTTTCCTGGAGCTGCCGGAAGGACAGCCCCAGGGCTTGGGCCCATGGGTGAATGAGCCAGGGAAGAAAAGCAGAAAATGCCCGAATGGACAGAGATGGCCTGGGTACAAAGAGAAACAGACACAAAGTGGGCTCTGGTGCCTCCCTGGCAGCTCCGGGCTGGTCTTGGAGGGGAGTCCTGCTGTCAGGGCTAGGGGTGTGGAGGTCGAACCTGGACACAGATGCTGAAGGGTTCCGATTCTGCACTTACTTGCCGGGTGACCCGGGTTTGGTGGCTGCCGGACTTTGGGCCTCCTTTTCTCATCTGTAAACTGGGGGTGATGGCAATGGCGCCTTCCTCGTGAACAGCTGCAAGGATTTAAGTAAGGATGCTGTGCAGGACTGGACGGGGTTAGGGTAGGGCGGTGCGTCCGTGTGTGATTCAGAGAGCCGTTGTGGCTGCAGCGGCTGCTGTTGTTGGTGTCACTGTTATTGCTGCTGGCTTCTTGGTGCTGCCTGGAAACTTGGAATTGGAGGAGGTGATACTGGAGTTGCAATTCCAAGGATGCCAGGCAGAGGGAAGAGCAAGGCTCTTGCTCTTCTCTGGGAAGCTGGGAGGTGACACAGCACTGGTGTGCACGTAGCCAATTGTGGTATTTCTGGAGGTGAAGCTGGAAGTTGAGCTGGGTGGGAGAAGAGGTGTGCAAGCTGGACCAGGCAGGGGTGGGACTGTTTTGGGGAAGAGCTGGCCAATTCCTTGCAGTACCAGGTCTCTCCACAAGGTGGCGCCAGTGGTTAGTCCCTGCTTCTCTTGTCTAACTTGTATTTTACAAGTTCTACTGTTTGGGTTGCTTTTTGGAAGCTCTCTCTGGTACCTGATAGTGACCCACATGGTTGTCTGAGAATTGGGGGAAACATACTCCCAAATCTCTGAAAGCCATGCTTATACCCTAGTGGGGCTGGAAATGCCAGGCTGAGGGACTTAAGCTGTCTGGGGGGTACTAGGGAGTCACAGAGGGTTCTATAGGTAAAGAGGGGACAGGTTGGATTTGGTGTCTCAGTAGGTTCCCCAAGCCTCCGTGTGGAGGGTGCGCTAGAAGGGAGACTGAGCCCAGCGGTTGGATGGGGCCGGAGCAAGGTGCAGATGGAGAGAAAGAAGGAAACGGGGGAAGGAGAGTCACTCAGGAGGATTGGCAGGCTGTCGGGGGAGGGGAATGTTATGCAGATGGGGATGGTCCTAGGAGTGAGGGCCTCTGAGACAGGACCGGGAGGAAGAATATACTTGGGGAGACATTGGGGAGACATTCTGGGACCTGGTAGGGGCAAAGGGACTAGGAGGTCCCAGGGAAAGGTATTTAAAAGGTATTTAAAGGACTGCAGGAGCCCTGACCTGGGACCTGGAAGAGGGTCTAGGGCTGGGGACAGAGGGGAAACTGAGTCCACAGAGGTGGGTGAGACAGACTTAGGGGCAAGGAGGAGCAGGGGGAGGCTGCGGCCAGCCCTACAAACTCTGGATTTTACGGAGTAGGTAGAGGGTGGGTGAAGACAGCAGCCTCAGAGGCGGGAAGGAAAATCAGGTGCGCCTGGTGTCCCAGAAGTCCAAAGAGGAGAGCATTTATACAGGAAGCTGCAGTCATGTAAGATGAGGCCCGAGACACGGAGCCACCAGTTGAGTGGATTTTCAGAGCCAGAGAGCCAAAGGTGTTACGCGTGGGGGTCTTTGCAGCCAAATGGTGGAGGCGGAAGAACTGACCTATGAGAAGACCCAAGGCATCCAGAGGGGCCTGGAGAAGCAGGGGCAGAGAGTCTCAGGGAGATGTAGGGGTGGGGGAGGTCTGGCTTACCAAGGGAAATAGCCCTGCTGCTGGGATCAAAGAATTGATGTTGACGTGCCGCCTGTCCCAGTAGAGACACGCAGGGAGGATGAGGATGCGTCCCACACCCTGGGCCAGATGAGGATGCTGCCTGTCCCAGTAGAGACACGCAGGGAGGATGAGGATGCGTCCCACACCGTGGGCCAGATGAGGATGCTGCCTGTCCCAGTAGAGACATGCAGGGAGGATGCCTCTCATACTGGGGGAACCCCAGGATGCAGATGCTTCCTGTCCCACTGGAGGCGCTGAAGTCCTCTGAACCACACAGCATGGAAGGAGGTTCTTCCTCTCACCCTAGGAGACACATACATAGTGGCATTGCTTCCTGTCCCACCAGATGTGCCAAGGCCTCTAGGCTGCATTCTGCATGGCCTAGAGCCCTGGCAGGCACAGCTGAAAACAAAGCAAGCAAGACCAGCCCAGTGGCTGTCGGGAGCCAAGACCTCCTGCTGGAACCTGGAGAGTGGTCCTGGGCAGAGTTGGGGGGCAGGCCTGAGAACCCCTCGCAGGACAGGCAGGGGTCAGCCGGCAGTAGTTGGGCTGGTCTGGCCCACTGGGGCCTCTTTTGGGGAAGAGAGTGTTTCCTCATGCCTTGATGGGAGCCACTGAGCTTTCAATTTTTTTTTTTTTTTAATACAGAGTCTCGCTCTGTTGCCCAGGCTAGAGTACAGTGGCGCAATCTTGATTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCCGAGTAGCTGGGACTATAGGCGCCCGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGGCGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAGCTCCTGACCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGGACCGGGATTACAGGCATGAGCCACCATGCCCAGCCTGAGCTCTCAAATTCTTAAGACACCCAGATAATGGCCACACCAGGAAGGTCCTAGACCACTCCCTGCTCTGTTCCAGGTGCTGGCCTGGTGCCGGGTTCACCAGCCACATCACCATGGGTGCAGATGGGCGAGCTGGGAGCTCCTGCCACCTTGGGGTGCTTTGCGGCTGCCAAGGGCAGTTGAACCCAAGCCAGGCCCAGCTGAAGGCTTTCAGCAGCCTTTACTCTTTGGCCTTCTTATAATCCCTAGTGAAGGGGTTGGCTTTTATTTATTTATGTATTTATTTATTTATTTATTTTTTGAGACAGAGTCTCGCTCTGTCGCCCAAGCTGAAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCAAGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCTGCCACTGCGCCCGGCTAATTTTTTGTATTCTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGAGCCCGGCTAGGAGTTGGCTTTTAATCTCCAGGACCTCTTTGCCCTGGGAATAAAATCCCTTTTCCTGTGCCACCAGGCCTCCCCAGCTGGCCCCAGCCTTGGTTCCCACTACCTTCCCCAAGCTCTGGCCATCTGGCCATCTCGATGGCCTCTCCAGCCTCTGACATAAGAGAGCCTGCTTATTCTTGCCTCAAGGCCTTTGCCTGTGCTGTTCCCTCTGCCCACAGTGCCCTTCCTTGTGGTCTGTGTGTGGCTGGCACCTCACCTTTCAGAGCTTAGCTCAGAAGTCTCCTCTAGGGGAGGCCCTGTGATCCCTGATCCCCTGCAGAAGCCCACCTGCTGCCCCAGCCTGCACGGTTTTCTTCACAGCCTCTGCCACAATCTGGAAATTATTGGGTTCATTTACTTGTTTCCTTGTTAATGTCTCCCACTCCCCACCTACACGCATGAGAACGTGAACCCCTGAGAGTCGTAACCTTATCTGTCTTCTTTGGGTTATGTTCCCGGAACCTAGAAAGGTGCCAGGCACACAGCGGATGTTCAGTAGGATGGTAAACAAATAAAGCTTCTTTAGGCTGATGAAAAAACTGAGGGTCAGGCGCGGTGGCTCACGCCTGCAATTCCAACACTTTGTTTGGGAGGCTGAGACAAGCAGATAACTTGAGTCTGGGAGTTCACGACCAGCCTGGTCAACATGGCAAACCCCGTCAATACAAAAAATACAAAAATTAGCCATGTGTGGTGGTGTGCGCCTATAATCCCAGCTACTCGGGAGGCTCAGAATTACCTGAGCCTGAGCGCTTGAGACTGCAGTGTGCCATGATCGCGCCGCTGCACTCCAGCCTGGGCAGCACAGTGAAACCCTGTCTCAAAAAAAAAAAAAAGAAAAAGAAAGAGAGAGAGAGAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGGAAGGAAGGAAGGAAAAGAAAAAAACTGAGGCTGAGGCTCAGAGAGGGGAGGGGAGTTGCTCAGGCCCACACATCTCTGATGATTTATAAAGCATTTATAGAGAACTTGCTATGTGCCAGGCACTTCCGCACAGTGAGAGCCAGGATGGCTTCGTGGCTGTACACAGGGGACCTGGCATCAAACCTGCCCAGGGTTCTGGACGCTGCTCTGCCTCTTCCAGGCTGTCACTGTGGGCACGTGACCCCACTTCTCTGAGCTATCTCAAAAACAGGAATCATAGTTGTGGGATTGAAATAAGGACTAAATGAGCTGATGTATTTAGAACGGTGCTTAGCACCTGGAGGCATCAATACAATTTGAGCTATTCTTCTTCTTCTTGAAAATAACTTTAAATTATTATTTTTAGAAGTAGGTGCTCAGTGGATGCCCATTTAATAGATAAGAAAGTTGAGGCTCAAAGATATGATGGCACCTGCCTTAGGTTCCAGCTAGGAAGGGGTAGGGTCAATATTTTTAAATGAGGCTGGCCAGACGCAGTGGCTCACTCCTGTAATCTCAGCATTTTGGGAGGCTGAGGAAGGAAGATCGCTTCAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATAGCAAGACCACGTCGCTAAAAAAATTAATACATAAAATAAAATGAGGCTGGCAGATTTTCAAGTGGAGGGGCAAATTTGATCTTGCAACTGGGTACCATGAGAGAGGTCTGATTTAGGGGGTATCTAGGGGCAAAGCATCTAGAACAGCAGAAACGACTGAGGCAGCGAGGAAATGCCAGCGGCAGGGAAGAGAGCTACCAAGAGGGCAAAGGTTGGGGGTCACAGTCCCAAGAAGAGATGGCCCAAAGCAAAGACAGAAATACAAAAGCACAGTGTCACTGGGGAGGAGACATTCCCTAAGTGCCAGGAAAGTGCAGGGCGGAGGTGGAGACCGTGGCAGGTGGCCCGGCCATGCCCCCCTCCCAGCTGGAACCCTGGGGGAGCTGGGCACCTGGTTGTTCACACGGCAGGGGAGGAACAGCCCTGTCAACTGCTGGCCCCGGGAAACTGGGCCTGGGGAGGACATGCTTGGGCATAATAAGTTAGCCCTGGGGGCAGGGCAGAGCTGGCCTCGGGCCCAGACCCTGCCGCAATGAGGACAGGCCTGGCTGTGGCCCCAGCATGGTGTCTGTTGCAG
Seq C2 exon
GTGGCCGGACTGTGCCATGCTGCTCCAGACCCAAGGTGGCAGCTCTCACTGCGGGGACCCTGCTACTTCTGACAGCCATCGGGGCGGCATCCTGGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105707:ENST00000392226:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF092725=Hepsin-SRCR=PU(4.6=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains