MmuINT1020862 @ mm10
Intron Retention
Gene
ENSMUSG00000001249 | Hpn
Description
hepsin [Source:MGI Symbol;Acc:MGI:1196620]
Coordinates
chr7:31109091-31110773:-
Coord C1 exon
chr7:31110714-31110773
Coord A exon
chr7:31109193-31110713
Coord C2 exon
chr7:31109091-31109192
Length
1521 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CAGCTTGGTGTCTGTTGCAGGTG
3' ss Score
9.47
Exon sequences
Seq C1 exon
ATGAGGAACCTGGGGCTCACAGAGGAGGTTCCACTTGTTCAAGACCCCAACCTGGAAAGG
Seq A exon
GTAAGGCCGCTATTTTATATTTTATCCTTTTTTTGTATATTTTTAATTTTCTATATGTGTGTGTCCATGTGCCCATGTGTATGAGTATGTGTATGTGTGTGCATGTGGGGGGGTGTGCACATGTGTGTATGAGAATGTGTATATATGTGTGCATGCACATGCGTGTGAGCATATGTGTGTGTATATACATGGGATGTGCATGTTCACATGTGTGTATGTGTATAGATGTGGGTGTGTTTGTGCATGCACATGTATGCGTATGAATACATGCATGTGCCTGTGTGGATACCGGTGTACACATTGGAGACGGCATGAAGAATCTTGTATGTCCTGCCCTATCACTCTCTGTGTATTTCCCATGATCTGGGGTCTCTCACTGAGCCTGCAGCTAGGCTGATGGCCAGGGAGCCCCAACGACCCTCCTGTCTGTCCACCCCAACAGTGCAGGGCTTAAAGACCTGCTCCACCACACCTGGCCTTTTACACAGTGCTGGGAACCTATCTCTGAATCCCACACTTGCCCAGCAAGTGCTCTTACCCATGGAGCCATCTCTCCAAGGTCACTATTTCAGAGTGGGGTTACCCCGCATAGTGCGATGCCTGGCATTGTAGCACTTAGGAAGCACAGACTAGCCTGAGTATCATAGGGAGACCTTGTCTAAGCTAGTGGTGGTGCATGCCTTTAATCCCAGCACTCCAGAGGCAGGGGCCATTGGATTTCTGAGTTGGAAGCCAGCCTGGTCTACAGAGAGAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTTTTGAAAAGCCAAAACCAAACCAGACCAAAATACAGGCAGATATGGTGACACGTGACTGCCATCCGAGCACTAAGGGAGGCAGGCAGGCAAACTCTCACTAGTTCGAGGCTAGCTTGTACATTATGGTATGTTTGATGTCAGCACTGTTAGGTAGTAAGACCTCATCTCAAAATACAAACCAACCCCCCCCCCAAAAAAAATCAAACCAAAAAAAACTTGGGTTCTCAAACTCCCAGATACAAATTTGATCTTGGAACTTGTGAGAATCAGGTCTTGGGGTTACCAAGAGGGTAAAGATCAGAGGTCACAGGCACCTTAAAGTTGTAAGAACTTCTGGAAAGGTTATCAGAAGAGAGGATCTGGGGACAGGCTGGCCGGAAGCAACAAGGGATATCCAGAAGTGCCTTGTCATCGGAAAGGAGTGGCCGCCAGCACTGGGGGGGGGGGGGGGCAGGGGGGAGCAGGAGGCCTGGCCATGCCCCTTCCCAGCTGGAACCCTTGGGGAGCCAGGCACCTGGCAATCCACACGACAGGAGAGAGACAGCCCTGCCAGCTGCCCAGCCTTGGGAAATGGGGCTTAAGGTACCACAGGCCCAGGCCCGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGCATTCCCGGGCAGGGGACTGGCCCAGTGCCCAACTCTTGCTGTGCTGAGGACCGACCTGGCAGTGGCCCCAGCTTGGTGTCTGTTGCAG
Seq C2 exon
GTGGCCGGACTGCAGCATGCTGCTCCAGACCCAAGGTGGCAGCTCTCATTGTGGGTACCCTGCTGTTCCTGACAGGCATTGGGGCCGCGTCCTGGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001249:ENSMUST00000108102:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.825 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types