Special

MmuEX0023219 @ mm9

Exon Skipping

Gene
ENSMUSG00000001249 | Hpn
Description
hepsin [Source:MGI Symbol;Acc:MGI:1196620]
Coordinates
chr7:31894110-31899763:-
Coord C1 exon
chr7:31899697-31899763
Coord A exon
chr7:31895733-31895792
Coord C2 exon
chr7:31894110-31894211
Length
60 bp
Sequences
Splice sites
3' ss Seq
GGTGCATGCTCATTTAACAGATG
3' ss Score
5.87
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTCCGCCCCAGCCCAACAGGTCAACCTGGGAATCATTAACAAGAGTCCCTGACATGGCGAAGGAGG
Seq A exon
ATGAGGAACCTGGGGCTCACAGAGGAGGTTCCACTTGTTCAAGACCCCAACCTGGAAAGG
Seq C2 exon
GTGGCCGGACTGCAGCATGCTGCTCCAGACCCAAGGTGGCAGCTCTCATTGTGGGTACCCTGCTGTTCCTGACAGGCATTGGGGCCGCGTCCTGGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001249_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.667 A=0.821 C2=0.055
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000103737





     
                   









    
Main Skipping Isoform:
ENSMUSP00000131658





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000038149, ENSMUSP00000038149f69A, ENSMUSP00000127229
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr19:35539429-35539488 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr18:45978349-45978410 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCAGCCCAACAGGTCAACC

				
R: 
TGTCAGGAACAGCAGGGTACC

				
Band lengths: 
133-193

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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