MmuEX0023219 @ mm10
Exon Skipping
Gene
ENSMUSG00000001249 | Hpn
Description
hepsin [Source:MGI Symbol;Acc:MGI:1196620]
Coordinates
chr7:31109091-31114744:-
Coord C1 exon
chr7:31114678-31114744
Coord A exon
chr7:31110714-31110773
Coord C2 exon
chr7:31109091-31109192
Length
60 bp
Sequences
Splice sites
3' ss Seq
GGTGCATGCTCATTTAACAGATG
3' ss Score
5.87
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTCCGCCCCAGCCCAACAGGTCAACCTGGGAATCATTAACAAGAGTCCCTGACATGGCGAAGGAGG
Seq A exon
ATGAGGAACCTGGGGCTCACAGAGGAGGTTCCACTTGTTCAAGACCCCAACCTGGAAAGG
Seq C2 exon
GTGGCCGGACTGCAGCATGCTGCTCCAGACCCAAGGTGGCAGCTCTCATTGTGGGTACCCTGCTGTTCCTGACAGGCATTGGGGCCGCGTCCTGGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001249-'2-12,'2-9,6-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.825 C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCCCAACAGGTCAACC
R:
TGTCAGGAACAGCAGGGTACC
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types