RnoEX0042443 @ rn6
Exon Skipping
Gene
ENSRNOG00000021097 | Hpn
Description
hepsin [Source:RGD Symbol;Acc:61982]
Coordinates
chr1:89543854-89549090:-
Coord C1 exon
chr1:89548990-89549090
Coord A exon
chr1:89545490-89545549
Coord C2 exon
chr1:89543854-89543954
Length
60 bp
Sequences
Splice sites
3' ss Seq
GGTACATGCTCATTTAACAGATG
3' ss Score
5.61
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CCCCCAGGCCATGCCTCCTTGTTCCTGTCCCTAGGTTCCGCCCCAGCCCAACAGGTCAACCTGGGAATCATTAACAAGAGTCCCTGACATGGCGAAGGAGG
Seq A exon
ATGAGGAACCTGGGGCTCACAGAGGAGGTTCCACTTGTCCAAGACCCCAGCCTGGAAAGG
Seq C2 exon
GTGGCCGGACTGCACCATGCTGTTCCAGACCCAAGGTGGCAGCTCTCACTGTGGGGACCCTGCTGTTCCTGACAGGCATTGGGGCTGCGTCTTAAAGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021097-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCTCCTTGTTCCTGTCC
R:
CAGTGAGAGCTGCCACCTTG
Band lengths:
143-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]