BtaINT0078214 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018169 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr19:56473096-56473499:-
Coord C1 exon
chr19:56473344-56473499
Coord A exon
chr19:56473261-56473343
Coord C2 exon
chr19:56473096-56473260
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
3' ss Seq
AAGGCATCTTTCCTGCACAGAGC
3' ss Score
5.52
Exon sequences
Seq C1 exon
GCTCCGCCTTCACTTTGAGCACACCCAGCGCCCCGGGCCCGCTGGTGTTCACTGCCCTGAGCCCCGACTCGCTGCAGCTGAGCTGGGAGCGGCCCCGCAGGCCAGATGGCGACATTCTGGGCTACCTGGTGACGTGTGAGATGGCCCACGGAGGAG
Seq A exon
GTGCTGCCTGCCCCGGGTTGGGGGGCGGAGGGGGAGGAGTGGAGAGGGAGCCGCAGAGGCTGAAAGGCATCTTTCCTGCACAG
Seq C2 exon
AGCCAGCCACTACGTTCCTGGTTGACGGCGACAGCCCTGAGAGCCGGCTGACCGTGCCTGGCCTCAGCGAGAACGTGCCCTACAAGTTCAAGGTGCAGGCCAAGACCACCCAAGGCTTCGGGCCGGAGCGAGAGGGAATCATCACCATCGAGTCCCAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018169:ENSBTAT00000042566:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(49.4=81.1)
A:
NA
C2:
PF0004116=fn3=PD(49.4=76.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACTTTGAGCACACCCA
R:
CGTCAACCAGGAACGTAGTGG
Band lengths:
177-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]