GgaINT0127641 @ galGal3
Intron Retention
Gene
ENSGALG00000002389 | E1C9G7_CHICK
Description
NA
Coordinates
chr18:4714457-4715106:-
Coord C1 exon
chr18:4714951-4715106
Coord A exon
chr18:4714622-4714950
Coord C2 exon
chr18:4714457-4714621
Length
329 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
CATACATCTGTGTGCATTAGGGG
3' ss Score
5.22
Exon sequences
Seq C1 exon
GTTCACCCTTCACGCTGAGCACACCCAGTGCCCCCGGACCGCTGGTTTTCACTGCCCTCAGCCCTGACTCCCTGCAGCTCAGCTGGGAGAGACCACACAAACCCAACGGGGCCATCCTGGGTTACATGATCACCTGTGAAAGGCTGCACGGAGGAG
Seq A exon
GTATGGTGTCAGGCTGTGGAAAAGCAGTTACCCATGCAGAGAACAAGATGCCTCCAGCAAAGGCAGTATAACAGAAGTGGTGGGAAGAAGGGACCCATAGCTCAGTGCAGCCCAAATCCAATGGAGGTGGTTGGTTGGAAGGTCAGCGCTGTGCTGAAACAGCAGAACCGGGTGGTGTGATCGCACTGCCAGTGTATGGCATAAGGTTTAGGGACAGCTGAGACATCAGCCAGAGATGGAGAATGTTTGCTTGTCTACCTTCTCATTGGACACTCACTGGACAGTCTCATTGGAGGCTCTCACTTCTGTCATACATCTGTGTGCATTAG
Seq C2 exon
GGGAGCCCAGGAATATCTATGTGGAAGGTGACAATCCAGAAACAACCCTGACTGTGCCCCACTTGAAGGAGAACATCCCGTACAAGTTCAAAGTGCAAGCCAAGACCACCCAAGGCGTTGGGCCGGAGAGAGAAGGCATCATCACCATCCAGTCACAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389:ENSGALT00000003760:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(49.4=81.1)
A:
NA
C2:
PF0004116=fn3=PD(49.4=76.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCACCCTTCACGCTGAGC
R:
CCATCTTGTGACTGGATGGTGA
Band lengths:
319-648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]