BtaINT0078216 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018169 | ITGB4
Description
integrin, beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
Coordinates
chr19:56472338-56472999:-
Coord C1 exon
chr19:56472892-56472999
Coord A exon
chr19:56472773-56472891
Coord C2 exon
chr19:56472338-56472772
Length
119 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CAACACTTCTTCCCCTGCAGATG
3' ss Score
10.45
Exon sequences
Seq C1 exon
GACCCTTTCCACAGCTGGGCGGCCACTTGGGGCTCTTCCAGCACCCAGCGTCAGGGGAATACAGCAGCATCACCACCCACTCCAGCACCACTGAACCCTTCCTACTGG
Seq A exon
GTGAGTTGCCTGGTGGGGGCTCCTGGCTCTCCCCAGGAAACACAGAGCTAACAGAGGAAGGGGTGGGGGGGGGCAGTCAGGACCCAGGGGTGGGTCCTTCAACACTTCTTCCCCTGCAG
Seq C2 exon
ATGGACTGACCCTGGGCTCCCAGCATCTGGAAGCAAGTGGCTCCCTCACCCGGCATGTGACACAGGAGTTTGTGAGCCGGACTCTGACCACCAGTGGGACCCTCAGCACCCACGTGGACCAACAGTTCTTCCAGACCTGAGCGCCCCCCTCAACACACACACCCCGCCCCACCCCCTCCCCATGTGCTGCCTCAGCTACTCCATCCTTGGACCCCTGGTGGCCCACCCCAGCCGCATGCTGATCACAAGGCCGCTGCCTCTGGCCACAGCACAGGGGCTCAGTGTCCTCTGGACAGCGTGGAGGGGGCAGAGGTTCCAGAAGGCCCTTCTGGCTGCCCCCCTGCCCCAGGCCCCAGCCCCTTTGTAACCAAAGAGCTGGACCCAGCATGACAAGGGCCTGGCTTTGTTCTGCTATAATAAAGGATTTCGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018169:ENSBTAT00000042566:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACAGCAGCATCACCACCC
R:
AGGATGGAGTAGCTGAGGCAG
Band lengths:
258-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]