GgaINT0127643 @ galGal3
Intron Retention
Gene
ENSGALG00000002389 | E1C9G7_CHICK
Description
NA
Coordinates
chr18:4713366-4714143:-
Coord C1 exon
chr18:4714030-4714143
Coord A exon
chr18:4713644-4714029
Coord C2 exon
chr18:4713366-4713643
Length
386 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
AATCCATCCTCTCCTTGCAGACG
3' ss Score
10.76
Exon sequences
Seq C1 exon
GTACTTTCTCCCAGTTCGGAGGACAGCAATACACAAAAGAGGTGTACAACTTCCCCACAGAATACAGCACCAAAACCAGCATCAGCCATTCCTCTCTGGACCCCCACTTCTCAG
Seq A exon
GTAGGGACCTGGGGAAGATCTGAACCACGGTTCTTCCTGTAGAGATGCATGATGACCATCCTCAGTTATGTCAGCGTGGCTGTCCCACCTTGTCCCCTCAAGGACTCACAGGTTCATGCTGCAAGATGGAGAGTTTGGGAGCTGTTAGGAAATCCTAAGCTGTATCAGAGGGTCAGGTGGGGGTTAGGGAAAGGTTCTGCACCAGAGGGTGGTGGGCATGGAACAGCTCTCCAGGGCAGCAAGCATTGCCCCAAGCTACCAGAGCTCAGGGAGCATTGGAGCACCACTCTCCAACATAGGGTGCTGTGTGGGATCAGGGTTTGGACTCAGGGTCCTTTCCATCTTGGGATGTTGTGTGGCTCTAGGAATCCATCCTCTCCTTGCAG
Seq C2 exon
ACGGCATGCTGATGACGTCCCAGCGAGTGGAGAGTGCCAGCAGCACCCTCACCAAACAGGTCACCAAAGAGTTCATCAGCCGCACCGTGACGTCCAGCGGGACCCTCACCAAGCAGGTGGAGAGGCAGTTCTATGAGGCCTGAGCCGGGGCAGCAGGACTCTCCATTGGGGCTGGCGGAGCTTCATAGGACCATCCAGCAGGGCTTCACCCAGACTGTGCTTGGGCAGCTCCTCCAGACCTTCCATGGCACTTTGAGCTCTGCACACTCATGGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002389:ENSGALT00000003760:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.234
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTCGGAGGACAGCAATAC
R:
AAGTGCCATGGAAGGTCTGGA
Band lengths:
357-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]