BtaINT0078603 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7749977-7751170:+
Coord C1 exon
chr23:7749977-7750149
Coord A exon
chr23:7750150-7751005
Coord C2 exon
chr23:7751006-7751170
Length
856 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TGCCCTGCACTTGCCCACAGCTG
3' ss Score
9.38
Exon sequences
Seq C1 exon
GCGTGCTGGGCTCCCCGCTCATCTCACTGCTCTTCTGGATCCTCATCTGCTTCTCCATCGCGGCCCTGTTCACCAAGCGCTACAGCATCCGCCCCCTCATCGTGGCGCTCATCCTGCGTTCCATCTACTACCTGGGCATTGGGCCCACGCTCAACATCCTGGGTGCCCTCAAC
Seq A exon
GTGAGTGCCAAAGGACCCCAGCCCCCACCCCTCAGGGTTCATCATGTAGTCGGACCTGAAGCGGGCCCGTTGCCTCCGACTGGCCACTGCTCTCCCCATCCCTCGGTCTCTGAGCCGGAATCATTACAGACCCGAGGTTGGGACCACTCTGTCTTCTCCATCCTCCTGGACAACTCAGGGCAGCAGACAGTTGGAGTCAGCCAGCCAGGAGCCACTTTGGGGCACCGGCTTCAGGGCTGCCGGGTACCCGGAGTTAGTTGTGCACTGCCTGAAGGCACACTGAGGACATCAAAGATTTATGTGTTATGACACTTCCCTGACGGATAGAAATAAAGCGCCTCAAGCAAGTGGGGGTACCTTTTCGTAACTTAATCATCAAAGGCCAAGGGTGTTCTTCTCTGACCTGTTCTTTTCTTGCATCTTACTTTCTTTCTGGTGGCTCAAACGGTGAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTCGATCCCTGGGTCAGGAAACTCCCCTGGAGAAGGGAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCATGGACAGAGGAGCTGGTGGTGGTCTACAGTCCGTGGGGTCGCAGAGAGTCGGACACGACTGAGTGACTAACACTTTTCACTTCTTCCTGAAGCTCGGGTCTCCCAGGGGTCTTCCTCTGTTCTAGTCCCAGAAGCATTTCAGGGAGCATTTTCATTAATGCCATGTCTGCCATGCTGAGCAAGACCAGCTCAGACCCACTCTCCTGAAGACCTGGCCTCTGCTCTGGCCTGGCCCCAGGAGTGGGGGTTCAGGGTGGGAGGTAGGGCACCAACCCCCATGCCCTGCACTTGCCCACAG
Seq C2 exon
CTGACCAACAAGATCGTGTTCGTGGTGAGCTTTGTGGGCAACCGTGGCACCTTCATCCGGGGCTATAAGGCCATGGTCATGGACATGGAGTTCCTGTACCACGTGGGCTACATCCTAACGAGTGTCTTGGGCCTCTTCGCCCACGAGCTCTTCTACAGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(18.2=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCCGCTCATCTCACT
R:
AGGATGCTGTAGAAGAGCTCGT
Band lengths:
328-1184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]