MmuINT0084579 @ mm10
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27116609-27117330:+
Coord C1 exon
chr17:27116609-27116781
Coord A exon
chr17:27116782-27117165
Coord C2 exon
chr17:27117166-27117330
Length
384 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GCCCTGCCCTTTCCACCCAGCTG
3' ss Score
8.37
Exon sequences
Seq C1 exon
GCGTGCTGGGCTCGCCGCTCATCTCGCTACTCTTCTGGATCCTCATCTGCTTCTCCATCGCTGCACTGTTCACCAAGCGCTACAGCGTCCGTCCCCTCATCGTGGCGCTGATCCTTCGGTCCATCTACTACCTGGGCATTGGGCCCACGCTCAACATCCTGGGTGCTCTCAAT
Seq A exon
GTGAGTGCGGCGGGGCCCTGTGGCCACCCTGCTCACCTCCCGGTCCCTCCCACTCTCTGTCCCAGCTCCTTGTAGTCAGAGGTTGAGCCTGTTCTGTGTTCCTCCCTCCCACAACCAAGGCAGCCAGGATTCAGACAACAAAAAGGAGCTGCTTCAAGGGCAGGGTGGTGCCCTGGGATACGGGAGAGAAATCTTTTCCTAACCAGGAGCTGTAAGGCTGGGGGCTTTTCTGTTCCTCCTGGGGCTTCTCTGAGTCCCACTGATTCTCTGTCTCTCGGGATGAGTGAGATCAATACCTCTCGTTGCCCTGGGCTGGACTGGCAGGCCTGAGGGTCAGGTTGGAGGGTGGGGTGCTAACCTCCTTGCCCTGCCCTTTCCACCCAG
Seq C2 exon
CTGACCAACAAGATCGTGTTTGTGGTGAGCTTCGTGGGCAACCGTGGCACCTTCATCCGAGGCTATAAGGCCATGGTCATGGACATGGAGTTCCTGTACCATGTGGGCTACATCCTGACAAGCGTCCTGGGCCTCTTTGCCCATGAGCTCTTCTACAGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644:ENSMUST00000049308:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(20.3=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCCGCTCATCTCGCTA
R:
GGATGCTGTAGAAGAGCTCATGG
Band lengths:
326-710
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types