BtaINT0078613 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7720873-7721291:+
Coord C1 exon
chr23:7720873-7721019
Coord A exon
chr23:7721020-7721195
Coord C2 exon
chr23:7721196-7721291
Length
176 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
TTTCTTCCTGCCTCGCCCAGGTG
3' ss Score
9.3
Exon sequences
Seq C1 exon
GGAGACGTGGTGCGGCTGTTCCACGCGGAGCAGGAGAAGTTCCTGACGTGCGACGAGTACAGGGGCAAGCTGCAGGTGTTCCTGCGCACCACGCTGCGCCAGTCTGCCACATCAGCTACCAGCTCCAACGCCCTCTGGGAGGTGGAG
Seq A exon
GTCAGAGCCCCGCCCCTGCCGGGTGGGAGGTCACCCCCCCAACACACGCACACACAGCGTCCGTCTCCTCTGAGCCCCTCCGCAGCCAAGGGGCCAGAGAGGATCGCAGAGCCACCCTCCCAGAGCCCTCTGGGCCTGCAGCGTTCCTCCCATGCATTTCTTCCTGCCTCGCCCAG
Seq C2 exon
GTGGTCCACCACGACCCGTGCCGTGGAGGAGCTGGCCACTGGAACGGCCTCTACCGCTTCAAGCACCTGGCCACCGGCAACTACCTGGCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(24.0=100)
A:
NA
C2:
PF0281514=MIR=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCGGCTGTTCCAC
R:
CTCAGCAGCCAGGTAGTTGC
Band lengths:
237-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]