RnoINT0076782 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5677696-5678101:+
Coord C1 exon
chr20:5677696-5677842
Coord A exon
chr20:5677843-5678005
Coord C2 exon
chr20:5678006-5678101
Length
163 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TGACCCTTGCGTGCCCCTAGGTG
3' ss Score
11.98
Exon sequences
Seq C1 exon
GGAGACGTGGTGCGGCTGTTCCATGCAGAGCAGGAGAAGTTCCTGACCTGTGACGAGTACCGGGGCAAGCTTCAGGTGTTCCTGAGGACCACGCTGCGTCAGTCCGCCACCTCGGCCACCAGCTCCAACGCGCTCTGGGAGGTGGAG
Seq A exon
GTGAGAGCCTCACCCCCTGCACTTTACCCCCCAGCATCCTAGAGGATGGAGTGGCTGTCCTGTCCCTTCCTTCCCCTGGCCTCTCTATAGCCGCCAGGCCTCCCCAAGGTCTGAACTTTCAGTCCCGGTTCCTCTTTTCCACCTGACCCTTGCGTGCCCCTAG
Seq C2 exon
GTGGTCCACCATGACCCCTGCCGCGGCGGAGCGGGACACTGGAATGGTCTGTACAGGTTCAAGCACCTGGCCACGGGCAACTATCTGGCGGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(24.0=100)
A:
NA
C2:
PF0281514=MIR=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCGGCTGTTCCATG
R:
TTCAGCCGCCAGATAGTTGC
Band lengths:
237-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]