DreINT0083619 @ danRer10
Intron Retention
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39947037-39947362:+
Coord C1 exon
chr6:39947037-39947183
Coord A exon
chr6:39947184-39947266
Coord C2 exon
chr6:39947267-39947362
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GATGTTTGCATGCGTTTCAGGTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
GGTGACGTGGTGAGGCTGTTTCATGCAGAGCAGGAGAAGTTTCTGACATGTGATGAGCATCGGAAAAAGCAGTATGTGTTTCTGCGTACCACCGGACGCCAGTCTGCAACCTCCGCCACTAGTAGCAAAGCACTCTGGGAGGTGGAG
Seq A exon
GTAAGTTTAGGACCTAACTTTGTGAACTGACCAGATGTTTTTGTTGGTTTGGGAATCTGAACAGATGTTTGCATGCGTTTCAG
Seq C2 exon
GTGGTTCAGCATGATCCCTGCCGAGGTGGAGCCGGCTACTGGAACAGCCTCTTTAGGTTTAAACACTTAGCCACCGGCCATTACCTTGCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655:ENSDART00000149019:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.9=100)
A:
NA
C2:
PF0281514=MIR=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTTTCTGCGTACCACCG
R:
CTCTGCAGCAAGGTAATGGCC
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]