BtaINT0078494 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21816473-21821482:-
Coord C1 exon
chr22:21821336-21821482
Coord A exon
chr22:21816569-21821335
Coord C2 exon
chr22:21816473-21816568
Length
4767 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
AATCATTTCTCTTCTTGCAGGTG
3' ss Score
11.07
Exon sequences
Seq C1 exon
GGTGACGTGGTGAGGCTGTTCCATGCCGAGCAGGAGAAGTTTCTCACCTGTGACGAGCACAGGAAGAAGCAGCACGTCTTTCTGAGAACCACCGGCCGGCAGTCTGCCACGTCCGCCACCAGCTCAAAAGCCCTGTGGGAGGTGGAG
Seq A exon
GTAAGGGACGGCACAGGGCAGGCAGGGAGAAAGGACGCGTGGGTTTATAGGAGTAAAGTCAGATCCAGGTACTTCTACCTACCTTGTTCCAAGGGATGACTTGGGATAACTAAGAGAAACACACACATCACGCCGTATCAGAAGGATGCAGGGTAAGCCAACTCCCACCTGAAAATTTCCAATTTCCCTTCTCTGGGTCATCCGATCATCTCTTGCTTCTGTATTTTTCTTTCCCTTCCTCAGTTACGTATCACAACAAGTGATCAAGTGCCTAACCAGCATGATGGTAGGTGAGTGCATATTGGTGACAGGACGAAAAGATGCCCATCTGATAACTGGCTGGGGAAGGTGATGGGAGGCACATTCCTTGTCCTCTGGAGGTGATGAAGGAGTTTTCGGTTGGGCAAGGGTTTAAGAAAGACTTCCTGAAGGCACTAGCATCTGAGCTGCTACTAACAGGATAACCTATATTTCAGAAAGAAGAGATGAACAGAGTAGGTTACGTCTTGTAAGATACTGATGTGGACTTGGAAATAGCAGGCAGCCTTGGTTTAGAACTCAGTAACCTCATTTGAGGAGGAGCAGAGGATCGTCCTGCAAAACAAAACAGAAACTGTTCTAGGAGACCAGATCTTGAAGGGCAATATATCCAGGCTGTGGCAACTTGGGACTTGACACATAAAGCAAAAAACTATTAAGAATATCAGAACCCTACAGAAGTCTGTGACTGACTTTGGAAACTTAAAGTACTGCATCTTCTTCACTTGAAAATTAGTTGAAATGAATGAAACATGCAACCTTTCGAGGAGAGTTTCTGCCGTATAGACTTTGAAAACTTGGTTACTTACAAGTCTACTTCAGAACATCTATATTTTTTCTTCTGATAAGAAACAACTGTCTTAATTTTTACTCCCCCCAAAAACCTTTTCCTGCCAATTTTCCTTCTGAATAGCCTAGGGAAACACTGAATTTATTCCTTTTTTATTTTTTTCTTGAAGATTTTAGAAACAAAAGAGCCCCTTCAAAATAAAAGAAGGAAGACAACACCATGTATTTTATATTTCTCATCATGATTTAGGATTTTCATTATACATCGGCATATTCCCTGTCATTTTTACATAGTGTTAATCTTTTCCCATGTGAAGTAAGAACTTTACAATAGTGTACAGTTGAATCTTGAACAATGTGGGAGTTAGGGACATTTGCCCTCTGCATGGTTGAAAATCTATGTATAACTGATAGTTGGCCCTCTGTGTTCCTGGTTCCTCTGCATCATGAATTCACCCAGCCATGTAGAACTGTAATATTTAATATTGAAAAACCCATGTGTAAGCAGACCCATGCAATTCAAACCAGTATTGTTAAAGGGTCAACTCTACTTCTTTCTCCCTTCCCCTCCTTTTGGTGTTATTCTCTTGTGTTTTACCCCTATATGCTGCTAAGTTGCTTCAGTCGTGTCTAACTCTGTGTGACCCCCTAGACGGCAGCCCACCAGGCTCCCCTGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTAAAAAGTGAAAGTGAAGTCGCTCGGTCGTGTACGACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCCACCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCTGTTTACCACTATATATATATATATATATATATATATATATATATATGCTATAAACTCAATAGTGCATTACTTACTTTGCCTTGTTTAAGGAGTCATTTGTATGCTAAAAACATGGGAAAATGAGAGATTAGGAGTCTTTTATCTACATAGTTGGACTTCCCTTGTGGCCCAGCTGGTAATGAATCCGCCTGGAGACCTGGGTTCAATCCCTGGGTTGGGAAGATGCCCTGGAGAAGGGAAAGGCTACACACTCCCGTATTCTGGCCTAGAGAATTCCGTGGACTGTATAGTCCCTGGGGTCGCAAAGAGTCAGACATGACTGAACGACTTTCATCCACATAGTTATCCTCTCCAGCACTTCATTCCTTGGTGTACATTGAGTTTTCATCTGGAATCATTTTCCTTCAGCCTAAAGAACTTCTTTATCATTTCTTGTAGGGCAGGTCCACCACTGGCCAATTCTCTCAGCTCTCATTTGAAAATAAGAAAATAGCTTTATATTTGTGAAGATACCTTTATTTCACCTTAATTAAAAAAATATATTTTTTTTTCCTTTTTTGAAATAAAAGCTGCATGGAGATACAATTCATACATCACACAGTTCCCAAATTTAAAGTGTATAGTTCTCCATGGTTTTTAGTAGATCCAAAAGAAGCCCTGGACTCCTAGCAATCACACCTCATTTCTCTTCAGACTTGCCCCCTCCCCACCTCTGGTGACCACTGCTCCACTTTCTATCTCTATAGATTTGCCCGTGTTGAACATTTCATATACATGGTATCCTACAATATGTGGTCCTTTGTATCTGACTTCTTTTACGTAGCATATAGTTTTCAGAGTTCATCCATATTGCCCTGCATATCCATATTTAATTTCCTTTTATGTGAAACAATATTCCATTGTATGGATACGCCGTATTTACCCTATTTTATTTTTCATTGGCATTTGGATTATTTGTTCTTTTGGGCTGTTGTGAATACTGCTGCTGTGAACATTCATGTACAAGCTTCTGGGAGGAGTCTCAGTTCTCTCAGGGGTGGGATTGTGGGGCATATGGTAACTTCGTTTAACCTTTTGAGGACGGGCTGCTCTATCTTGTTGGCACTATTGTGTGTTCCAAACTGCAGTGTATTAAAGATTCTGATTTCTTCATACAGCCTTCATTCACAAAAGGTATTTTTGTTGACCATGAAATTTTATGTAAATAGTTTTCTCTTTTCATACTTGAAGATGCTAATCCATTGTTGTCTTGCATGCATTATTTCCTGATGTGAATTCATTGGTTTTCTTTTCTTCTTTTTTCCCTTTTTTGTCTTTTTTTCCCCCTGAAAGTGAAAGTTTCTCAGTCGTGTCTGACTCTTTGTGACCCCCGTGGACTGTACAGTCCATGGAATTCTCCAGGCCAGAATACTGGAGTGGGTAGCCTTTCCCTTCTCCAGGGAATCTTCCCAACCCAAGGACTGAACCCAGGTCTCCCACATTGGAGAGGGATTCCTTACTAACTGAGCTATCAGGGAAGCCATAGCTTTCTGCCTCTTAGCTACCTAAAAAAAAAAAAAAAAGCCCTAGTTTTTTTTCCCCTATCTACTTAAAAAATTTTCATTTCTGGTTTATATTTATCTTATTATGTGTCTTAATGATTGTGTGAGTGTGTATGTATTTATGCTACTTTGAAGTCATTGAGTTTCTTGAGATCTGTGCATATGTATCAAAATGGGAAATTTGAGGGTTACTATTTCTCACGTGTTTTTCCAGCCCCCACCAACCCCCAAGGACAGAGTGGATCCTTTGATACTGTCTGAAGGGTCACATTTTTCTGATTCTTGCCTGTCCACTGCTTTATGATAATATGCCACGCATTGTGATGTCACTGTGTTGAGAATCCAGATTCTGTTGCTTTCCTTTAAAGAGTATTGACTTTTGTTTTGTCAGACAAAGAAAGTTCTGGATCGCTTTGATCCTTTGGAGGTTTGTTGCAAAGCTTCATTAGGTCACGTGTACTGTAGCGTTTGTTTTGGGGGCTGTGCTAGCCCAGCTCCTAAGATATGACCCTTTCATTGTCTAGACTGAACGCCCCAGGTGTTCAACTAGTCACTCCTCTAGCTGGGTAGGTCAGAAACCTTCTAGCCAAATGTCATCTCCCAGATTGTTGAGCTTACCACTTCCCTCTCGTTTTATTTTAGGCCTTGGGCGGGGAGGGGAAGAGTCTTGCTGTACACACATGCAGCTTGATGTTCAACCAAAGACTATAGGAGGCCCCGTGCAGATTTCTGAAGTTTCTTTCTGGGGAGCTCTGTATTCTCCCCTCAGTCTCCTTGAATTCTGACGTATCTACTCAACCCACTGAGACTGGAGCGCTCTGTGAGAGTTCTCCTTCCTGATGCTTCCATCCGAAGAGGACCTCCCAGCCGGAAACTGGAGTGGTCATGAAGATCACCTTCTTTCCCTTTCCTCAGAGAGCACAGTTGTGAACTCTGTGTCATCCAGCATCAGTACCCAGCTGTTTTGTCTGTTTTATGCAGTTTTCTCATTGTCTGTGGCAAGTCCCTGTACTGTGTGTCGTGTCTGATTATGGCACCAACTACCGTTGCCAGTATTCCATCCTGAGCAGATGCCAGTTACATCTATTGTTGTAGTAACTTGTTCCAGGCACTGTGAGTGTCTGGCTTCAGAGCACAGACTTGGGCATGTGCCACAAGGCACGAGGGCATAGATAGGTTGCTGTTACAGGTTTTCATGAGGCTCATTTTTGTTTGTTTTACCTTTTGTGGATGAAGTCCAGAATCTTAGCTTCTTCCTTATGATTAAGGCAGATAATCTGAAAACCAATTGACCTTTGTTTTACAACCATTTCATGTTAATTAGGGGACTCTACTTCTCCTTTGGAGAAACATTACTTAAAATTACATGAGATCCTTGGAGCAGTTTTATTGGAAGATAATGATTGTTTGTCAGCTAGTAAACATCACTTCTGAACTATGACTTCTGTGTGATATTTCAGATTCAGTGTCCTCCTTATATGGGTTGACATTGCTTCTACTCCTATTAATCATTTCTCTTCTTGCAG
Seq C2 exon
GTGGTCCAACATGACCCATGTCGGGGAGGAGCAGGGTACTGGAACAGCCTCTTCCGTTTCAAGCATCTTGCTACCGGGCATTACTTAGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455:ENSBTAT00000054653:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.8=100)
A:
NA
C2:
PF0281514=MIR=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]