DreINT0083680 @ danRer10
Intron Retention
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35707255-35708120:-
Coord C1 exon
chr11:35707974-35708120
Coord A exon
chr11:35707351-35707973
Coord C2 exon
chr11:35707255-35707350
Length
623 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTGTTGATTTGGTGTTTCAGGTG
3' ss Score
10.11
Exon sequences
Seq C1 exon
GGGGACGTTGTTCGGCTGTTTCACGCGGAGCAGGAGAAGTTTCTGACCTGCGATGAGCACCGGAAGAAGCAGCACGTGTTTTTGAGAACCACCGGCCGTCAGTCCGCCACCTCTGCCACCAGCAGCAAAGCATTGTGGGAAATAGAG
Seq A exon
GTGAGTTTTAAAGTTGTATCTGTCGGGGTGATTGTCACAGATTAACACAACCTAAATGAGTTTGGCCTGAATATAATGTGAATCTGGCTGAATAGATTGAAGTAGTGGGAGTATAAACAGTGCTGTATAAGGAGTTGTAAAAAATAAAGCTGCAAGCAGCGATGAAAGGGACCTCGCACCTGGGTTTAAGCTGACATATATATATATATATACACCATTCTTCATATATAAATAGACTTCAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACAGTTGAAGTCAGAATTATTAGCGCCCTAGTTTATTTTTTTCCCCAATTTCTGTTTATTGGAGGGAAGATTGTTACTTATTAAACTTACTTATAAAACTTATTTCTAATAACTGATTTATTTTATCTTTGCCATGATGACAGTAAATAATATTTTACTTGATATTGTTCAAGACACTTTTATACAGCTTAAAGTGACATTTAAAGGCTTAACTAGGCTACACACTGATTTAGTGTCCTCCTGTGTGTGTAACTGCTCTATTAGATAGCTGATATATATTGTGGTGTTGATTTGGTGTTTCAG
Seq C2 exon
GTGGTCCAGCATGACCCATGTCGTGGCGGCGCCGGTTACTGGAACAGTCTGTTCAGATTTAAGCATTTGGCCACAGGACATTATCTGGCCGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149:ENSDART00000031993:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(22.6=100)
A:
NA
C2:
PF0281514=MIR=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTTGTTCGGCTGTTTCAC
R:
CTCTGCGGCCAGATAATGTCC
Band lengths:
240-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]