BtaINT0078778 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005124 | JADE3
Description
jade family PHD finger 3 [Source:HGNC Symbol;Acc:HGNC:22982]
Coordinates
chrX:90671884-90676765:+
Coord C1 exon
chrX:90671884-90672095
Coord A exon
chrX:90672096-90676597
Coord C2 exon
chrX:90676598-90676765
Length
4502 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TCTCCTTCCCGTGCCTCCAGGCC
3' ss Score
11.71
Exon sequences
Seq C1 exon
GTTATGGGCCAGTTGATGAGAATCTTATGGAAAAGACAGTAGAAGTCCTGGAACGCCATTGCCATGAAAATATGAACCATGCTATTGAGACAGAGGAAGGGCTAGGCATAGAGTATGATGAAGATGTGATCTGTGATGTGTGCCGGTCTCCAGACAGTGAAGAAGGGAATGATATGGTGTTCTGTGATAAGTGTAACATCTGTGTGCATCAG
Seq A exon
GTTAGTGAGAGTGGAGACCGCCACCTCCCCACGGTCACCCTTTCTGAAGCTCAGTGATGATCTCCAGCACCCATATCTGGGTAGCAACTTGCATTTAAGGGTGAAAATACCAACTTGGCCTGGCTGTTCTCCAGTAATTCCTTTAGAAATAATACTTCTTATTAACTTTAATCCAGGGGGCTAAACCCAGGTCTTTATTGTGTATCATCATGCCCAGGCCATTGAGATCGCCTTGTTCAATACTTTTACAGTACCCTGGGGTATCTCCTTGCTACCTGCCTGGGAGTGTCTCCTCTGCCTTGGAGTCCCTTTTATATCATCAGGTTACACCCATGGTCAGTAACCTTGGTGAGTTTACACTTCCTGTATCTGGAAGTGCGGACTTCTCATCCTGGCACCCAAAGCTCTCCTTCATCTCCCAAATATACCACTCTCAGAAAACTTGGTCCACTCTACTTTTAAACAGTAGAATTTTAGGATTGTAAAAAACTGACCCACTCCCTAATTTTACAAATAATACCAAGAGAAATGAAGTGACTTTACCCAACCTCTTACAGCCTTCTCCCATTTCTGGTTAACAAAACTTCACATATCTTTCAAGATCTAGTTCAAGTCCTTTCTTGAAGTCCCTTACCCTAAGTAATTTTTCACCCTTTTGAACATGTGTGTTTCATTCATTTCGTTAATTTATCTAGCAAATAGGTATGCAACACCATCCACGTACCAGAACTCTGCTGCATGCTGAAGACACAATGATGAAGAGGCAGACAAGGTCTTTGCCCCCAGGGAAATCAGTCTGGTGTAGGCTCTACAAGGAAACTGCCCACTGAGCATAGTATACCAAGCATGTTTGTAGATAGAAGTCCATGCTGCTGTAGAAGTGCATGGGAGGGATAGAGGTTGGGGATAACTTCCAGGAGGTGGCACCCAAGCTGAATCTTAACAGCTAAAGGGAAATGCCAGAAAAAAACAGCAGCATGTGTTCAGACAGAGAGGAGAACATGTTCAGGTGGGGTAGTAAGAGTAGGCAAAGTATGTTAGAGGCAACTCTGAGCAGTTCAGAACTGTGGAGAGTGATGGGGTCAAGTAGGGAAGGCATGGAGAGTGAGACTAGAGAGTAATACATGGAACATGTGAAAGGCCTTCCCTGATAAACTAAGGAACTTCGGTTTTGTCCTGTCAACCCTGAAGGATATGATTTGTAATTCAGAAATGTCATTCTGGCTACAAAATTATTAAAATGATTTAAATAATACAGGAGAGAGAAACCAGGATTTAAGACTTTAATTCTCTGGGCCACCTAACCTAACCCTTTGTATTAAAAGGTATTCAGAATTATTCTGTAATCAGTTGGGTCTCTTTCTTCCTTTTACTTGCATCCTTTTGGAGTGAATTTTGAAAATTTATCTTCACTCTATCAGGTATTAGCATTTATGTCCCACCTTTAGTGACAGAGAAAATCTTTATCACTTAAGTATGAACTTAAATATATAAATACCTGACAGCACAGGTCCACAGCCCCTTCTCTGCATTTCCAGAATTTTAAAGCTGTGAAAACTATAAGTTTTGTTTGTTTGTTTTTTATATAAGTTTGATACTAAATGATTTGAGGGAAGATGCAGGACTTACCCAGTGTGAGGCTTTTTGTAGTCTTTAGTCCCTTTTGTGAAAATACTCATATTTTGTTAGAGAACTATTAATGTATTGTATTTGATTATATGGTACTGCCCTGATCCCATTATTGGGTTATATAATATGCCAATATAATATGCCATGTATATACTGTATTACTTTCCTGAGATATGCACAGTTCTAAATTTCCTGATGTTTCTTACCCTAGAGTTTTCAGATAAATGATTGTGAATCTTTAGTAGATTTGAAGGTAACAGTACCAAGATCATGTGTATATGTTTTCTGTATTTTTCCTTCACAGTTAGGACAAAATATTAATGAATTATTTCCAGGTTCTTTGGGTAACAAAATGTAGCATAATAATTCTCCTTAAAGGTATTTTACTTTGAAAACATACCCAGTAATGACTATAAATGGTCCCTTTCCTCACGTAGAAAGAAATGACAATAACACATGACCAGGCCTTGCAGAATATAAGCTGGTATGTATTAAAGCTGAATGTTGGTGCCACACACAGTTTCATGTAAGAGAATTCTTCCTAAGTGAGTATGTTCACTTGAATTCTAAAGAGATACTTAGGTTAGAGCTCCCTCTGTTGACTGAAAAGTGACTTTAAATGATTTGGAAGATTTGGTTTACTTAACAGAATTGGGGACATGTTGACAATTGTTTTTATTAAACATAATTTTTCTTCTTTACTGCCACCATATTATATCAAATATTTGTTTCTTTGTGACTACAATACACTTATGGTCAGTGCTATAGAAGAGAGTTTTATTTTACATCAGTAGATTTTGGATTTTAAAAAGAACTTAAATTTTTTTCGTTAAAAAGTGTGAAAATTGGGACCATTCCAAGTCCCTTAATGTGTTCCATTTTCTGCTTCTTAGCCCAAATATTGAACACTCAAACTGAGGCCTAAATTAATTTACCTGAAGGTACATGCTCATAGTTTTTATACCTATCATATATATAATGTTTGGCACTAAATTTATTAACCCCCTGAAGTTATATGTGAAACATATGTTCGTGCATGTGGGCAGTTTTTTTAAAAATAAGAGTCCAGCCTTCATAATTTTATAGTCTAGGAAAAGTTGAGAGCCACTACAGTGAATTACAAGCTTCTGTGATCTTATGACTAGGAATAAGTCTACATAAGAGCTCAGTAAACGATTTGCTACCCAATAAAATGGCCATATAATAAAGGGTATTCCTAGAACCAGCTACTGGTTTTTCTTCTGCTCATCTGAAAGAGGCTCTATTTTAGGGAGGAAGCTTGCTTTCATTTCTTTGCAGACTTTCTGAATTTCAGAAAAGGAAAAAGCTTTGAAGGTTAGGGACCTTATAAAATGATGTCCTGCTTTTGTGAGAGCAGCCTAGTTAGAATCCAGCTTCAGTTCTTGAGTGAAATGTATTTGTTCTACCAAACCACCTACTCAAGCTCAGCATAGAGAGCCATCCAGATAAATTGATGATAAAGAACCTACCCCAATGACCTTACAGTATCACTGAGGAGATAAAACATAACAGTTAGAGAAGAATACATGATATTGACCAAGTACCCCTTATGAAATGGGCCTTAAGTAGTTTGCCAACCCCTGGTTTTAGATGGGGTTGGGGGTGGGAGCAGAAGGAGATTTTAGAGGCTTTATTGCTGTGCATTGGTATGAAGACTATAGCAGCCAAATAGAAGGATTGAAGGTATGAAGGAAAAAGAAGAGAATTTAGAAATAAATCAGTCCAGGCATGATATGAATAAGGACTTGGGTGGAGTAGTTGTGGTGGAGATGGAGAAGATGGTCAGAGTCTAGTGACGACTCTGAAGGGAATATTAGCAAGCCCAGGGACAATAGATGAAGGAAAGTGGATAATAGGGATCAAGGAATTTGGATCTGGAAGCTGCAAAGTATGGTGGTGATATGGATAGAGTTTGGAAAGGGGCTTAGACTAGTTGGGGCTAACATTGATAATGACTGTTGGAACTTGAATCTGAGCTGTGGGTGAACTCTCTGGGGCAGGCACAGACTTTGAATCTGCAATGGTGAATCAGTCATTGGTAAAGGTATGCTAGGCCACCTGGGGAGCCAAGTGGCCCTCAGCTATAGTCTCTAATGGTCAGGATTGAGCAGTAAGGGGGAAGGATGGGTGAGATTAGAGGTAGTGAAAAGGAAATCTAAAATATTACACAATCTAATCTCCCTCTCCCCACCCATAGTAGTTTATTTATTTATCCATCTTTGTTCTGTAAGGAATTTGAAGTGGCTTCAAGAACTCATTATGGAGTATTGTGATTAGTCTAATATTGTGTTCAGTTTAGGATCCATTAAGTCCCTTTTTCTTCAACCGAAGCAAGTAATTGCTCCAATTTGTTGAGAGTGCTTTTTTTATGCACCAGGCACTATCAGGCTCTTTAACATTAGCTCATTTGCTTTTCAGAAGTGTCATTCTGCTTATTTCCTAACACTTTTTCCTTGATCACAACAGTGCATGACATACAGACATTGTTCAGTAAGTATATGACTGACTAATTATAATACATAAGCATTGAGAAAGCTTTAGAAAATGGAGGTAAAAAGAAAAAAAAAATGTAATCACAAAACTCATAACAGTTGGGCTAACCTTTGTGTGTATATCCTTCTAGTCTTATTCTGTTGCCCTTAAATCAATTCTCATATAGAGACATGCTGATCTTAACAGATGCTAGAAGTTGCTTTTTATTTTGAGTGTTTTAAAATTACTAAATCCTGGATATGAGCTTGTTTGACCTTTTCTCCTAAAAGTGGAGGGTACTCTGTGACTGTGTACCAGAGCAGACATTGACCCAGTAAGTAGATGCTAACCATTCCCTGCTCTCCTTCCCGTGCCTCCAG
Seq C2 exon
GCCTGCTACGGCATCCTCAAGGTCCCAGAAGGCAGCTGGCTGTGTCGCTCCTGTGTCCTGGGCATTTATCCACAATGTCTGTTATGTCCAAAGAAAGGTGGAGCCATGAAGAGCACCAAAACAGGGACTAAATGGGCTCATGTCAGCTGTGCCCTATGGATTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005124:ENSBTAT00000006752:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(12.9=26.8),PF0013017=C1_1=PU(75.9=62.0),PF138311=PHD_2=PU(42.9=21.1)
A:
NA
C2:
PF0013017=C1_1=PD(20.7=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]