MmuINT0118736 @ mm9
Intron Retention
Gene
ENSMUSG00000037315 | Phf16
Description
PHD finger protein 16 [Source:MGI Symbol;Acc:MGI:2148019]
Coordinates
chrX:20071283-20076719:+
Coord C1 exon
chrX:20071283-20071494
Coord A exon
chrX:20071495-20076551
Coord C2 exon
chrX:20076552-20076719
Length
5057 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
TTTTTCATACTTACCTACAGGCT
3' ss Score
9.27
Exon sequences
Seq C1 exon
GTTATGGCCCAATTGATGAGACTCTTATGGAAAAGACAATAGAAGTTCTGGAACGCCACTGCCATGAAAATATGAACCATGCTATTGAAACAGTGGAAGGGCTAGGAATAGAATATGATGAAGATGTGATCTGTGATGTGTGCCGGTCTCCAGACAGTGAAGAAGGGAATGATATGGTATTCTGTGATAAGTGTAACGTCTGTGTACATCAG
Seq A exon
GTTAGTCCAAATGGAGAACATCTCCTCATGCAAGGTCAACACTAGTGTCAAAGTCAGAGGATAACATTTAGGCATTGGTTCTTCTAGTGTTGGGCTTCGGGGATTAAACTCAGATTGTCAGGCTTGGCTCGTGCCCTTACCTGATCAACAGTCAGATTTTTAAAATTTCATTAATTACTTATTTCTAACACCCATATGTAAATGTCTTACATTTAAAGATGAAAAATAAAAATTAGGCTCTGCTTTTTTTAGTACTCTCTCTAGAAACACTACTTCTTATGATCTCTAAGCTGCTTCACCTATTCCCAAGAGGCTAAACCTAGGTCTTTATTGTGTCACATTATGTCCGGACCATTGAGATTGTCTCATTTGATTCACTCAGGAAGTCCCTATGCTTCTTGCCTAGGAGACTCTCCTCTGCATTTAAGATATTCTCTACCTTAGAATCTCTAGGACATCATCACTGACCCATGATCTGTAATCTATATATAGAAGGCAAAGAGTTCTTATTTTAGTACCCAGGGCCTTCCCTATATACTATTCCCAGAAACCTAGGTCAACCCTACCTTTAGAGACCACAGGTGTCTGGGACTCTAAAGGACTATCTTAATGCCTTATTTTTACAGACAATGTAAGCAAAGGTTAAGTGACTTTACCCAAGTTATTTCACATCCTTTCTAACACATACTAATAATGATTAATAATGACATATTAATAATAATAGTGTTAGTGATGTCAGCACTCATTTCAACTCTTGTCCATATCTATGTTCTGTGCTCTGGTGAAACAAGGTCACTTGATGTATAGTGATGAATATTGGTAATACTATCCTGTCTCCATTTTATATCCATGTCTGAATTTAAAAATCTCTTCTAAGAGCTAAAGATGGTTCAGTTGATGAAATATTTGCTGCCAAAGCATGAGAACCTGAGTTCCCAAAGTACATGTAGAGAACTGAGCCCAGGTCTGCAGATGCAGAGACAAGAAGTTCCCTGGTGCTGGCCAGCCAGCCTAGCTAAATCAAGTTTCATGTCCATTGAGAGACCCTAGTTCAATAAACAAGATGGAGAACAATTAAGGAAGAAGATATTTAGCACTAACTTCTGACCTCCACACACATGTACAAGCACTCATGTACATGTGAACATAGCCATATACAATCTTGTCTTCTACATCACATTATCAAAATGTACTTCATCTTCCAAGCTGTAGTTCATGTTCGTTCTTGATTTATACTTAACTGAATTTTTATTTGTCTGAATATGTTATATATTTTATTGATACTATTAATTTATTTAACAAATACTGTATAACACTAAGTACCATCCATGAGCCAGAGCTGTGCTGCATTATGGTGACACAGTAATTAAGAGGCAGATACGCTTTCTGCCCCTCCCCCAGGTAGACCATGGTGTAATGACTAAAAAGAAACTGTCAGTTTACCATAGTGTCCAGGAACTTTTATAGATTATAAATCCATGCTGCTGTGGTAATACATGGAAATGATAAAGGTAAAAAACAACTTTCAGCAGGTAACACTCAACGCTGAATCTTAATGGCTGAAAACTGATGTCAGTATATCCAGAAAGGTTCAGACTATGTTAATGGCAAGTAGTCAGGAGTGAGTGAAATGTGTTAGAATCATGCCTCTATGAGTATTTGAAGAGCGGAGGAAAAGCAAGGAAGCCAGGGATAGGAAAGGAAAAAAGGCCCACATATGAAGAATCTTCTGACAAACTAAAAACTTCTCATTTATTCCATCAACTCTAAAAGGATATTTATGTTCTAGAAAGATAATTCTGGTCAAAACTAATAGAATAATGAGCCTGCATAACATAGGAGATAGAAAACAACCAAGACTTAAGACTTTTCCAGGCCACCTAACCTTAACCTTAACTTCCTATTGTAGAAAGAACTCAATTTTTTTGTCACCAATTACCTTAATCATTGTTCTATTGTTGGGAAGAGGCAACTATTATGAAAGAAAGCATTAATTGCTTGCAATTTCAGAGGTTTATTCTTATTATCATCATGGCAGGGAGCATGGTGGCATGCAGGCAAGCATTTGAGCAGTAGCTAAAGAGTAGTATCCTGATCTGTAGGCAGAGAGAAAGAGAGAGAGGGAGAGAAAGACACACACATTCTCTCTCTAGGCATAGCATGGACTTTTGAAACCTCAAAGCCCACCCCAGTGACTTACTTCCTCCAACAAGGCCATACCTTCTAATCCTTCAATCTTTTATTTTTTCATTCATTTATTTATTCACTGTATTTATGTTTTTATTCAGTTTATTTAGTCACAGCCCCCTCCCTTCTCTCCTCCCAGTTCCACCCTCCCACACCTATTTTCCCTTGTCATGTCACCTCCCTGCAACCCCCCCCACCATACCAATACACCCTGGCATATCAAGTCTCACTCAGCAGGACTAACTGCATCCTCTTCCACTGGTGTAAGACAATCCAGCTAGGGGAAAGGGACCAGACAGGCAACAGAGTTTGAGTCAGAGACAGCCCCCACTGCAATTGTTCAGGGACCCACATGAAGACCAAGCTGCACATCTGCTACCTTCAAACCACCCTATCAATTTAGCCTTTTTCTTCATTTATTGTATCTTTAAAAGGGTAAATTTGGAAATTTTATCTTCATTGTACCAATTATTGGCATTGTAATATATTTTCAATAGAAACAAAAATCTTTTATGACTTAACTATGAACTTAAAGTATCAGATAATACACACCCATAAGTCCTCTCATATAATTAATTCCAAAATTAAAATTTTCTGATGATTTCCCTTTTATCTGAAATTCTGAACCAGAACTGATTTGGAAACAATACCAGAACTTAGCTAATATGAGGTTGTTTATAGCCTTTACCCATTTTATTCAAATACTCATATTTTTATAGAAATACTAACACATATGGTTTTGTCCCTGGTCCCATTGGGCTTATATAATAACTTTCCTAAGATCTGAACAGTTTTGAACTTCGTAATGTTTCTTACTAAAGAGGTTTTAGATAATGATTGAATCTGTGGTAGGCTTGAAGGAAATAAGACAGAGGTCATCTTTATATATTTTCTATGTTTGTCTTTTACAATTAGGGGAAAATATCAAAGAATTATATTCAGGTTCCTTGACGTAACTGTAACGTAATAATCCCCCCCCCACACACACCCAAATTATGGCATTTGTTTTAGAAATATACCAGGTCACTATAAATGATACCTCTCTCACACATTGGCAATAGCATTTGACTGGGCCTTGCAGACTATAAACTGATATATATGAATGCTAGGAATTTGTTACAATATGAAATTTCATAAAAAGACCTTCTTCCAAACTGGGCGTGGCAGTACACTTGAGGCAGGAGGTTTGTGAGTTTGAAGGACCAATCTGGGATGAACATATCTGTCTCATAAAAAAGCTCCCAGGAAACATGAATAAAATACTGAGATTCTTATAAAGTAGATGTAATTTGGATCATAAATAACTACTTAGGTTAGAGCTCCCTCTGTTGACTGTAAAGTCACTTAAATAATAATTTAAATATTTGTTTACTCTCTAAAAGAATAGTGGCATATTGGCATCTGGATTGTTTAAATATAATTTACCTTTTATACTCCACCATATCATGTTCATTGTTCTTCAGTGTCGACTATAGATTCGCACTGCAGAAGTTTGTACCACTAGACTTTAGATTTTAACATCATACAACTTTTTTTCTTTAAAACTATGTGAAAGTTAAAACCATTCCAATTCCTTTTTGTGTATATATCCATAGTCTACTTCTTTGTACAGATATTGAATACTTAGTGTCAGAAATACTTAAGACTTTGCCAACTGTGTATAATCTATATTGTGTGTTGTCTCCTCCCCCCTCCCCCTCCCCCCCATCTAGAACTCTTTAAAATGTGAAAAAAGCATTCTAAGTTTGTTAGCCTTATAAAACAGGTCTTAAGCAGTAGCCAACACCTAGTTTAGATGATGGTGAATAAATGAGATAAGAACAGGAAAAATTCCTAGAAAATTTTACTGAGAAGAATCTGACAACTAAATAGAGGAAAGGTGAAAGCTGTGAAGAATGAATAAACAAATGTAGAAATAAATTCATCCTAGAATAGTGTGACAAGGAGTTGGATAGAGTAATAGTGGTGAGGATGGGGATGGAAAAGCAGTTCAGCCTCTGGGACTCAATGTAAGAAGTAAGTGCAGGCACCAAGTGTCAGTGGATGAAGGTAAGTAAGTAAAAGTCCAGGGATTTGGTCTAGAAGATCAAAAAGGAAAAAAGGTTAGCAATGGATGGTTATAATTCTTAGTGAATCTCACCTAAATGTGAATCTCTTAGAACCCACAAAAATTTTGAAACTGCTAGGTCTAATCAGTTGATGGTATAGGTAGGGTATATTTAACTATGTGAGGAACCTAAAGGCAACTAGGTTTCTTCTGAAATAGAGTAGAGCAATAAAGAGGGTCAAATGGACAAAATCAAAGATGGGGACAGTCTAGAATAATTCCTAAGTAATCTCCCATCTCTGAGTTATCATTTATTTTTCAATATAATTCAATAAAGAATTGAAACGCTCCTAGAACTCATTGTAATTCGATTATAATTCAATTGTAATTCATTGTAACTCAATTCACAAGTCTTTTTATTCAACCCAAGCAAATAATTCCTATAATTTGCTGAATGTTTTTATGTACCAAGTATTAGACTCTTTATAAACATTGGCTTATTTCACTTTTTTATCACAATACTACATGACATGTTGAAATTACTCCATTATTGCTTGGATGACCTGTTATATAAACAATGAAGACAGTTTGGAATACAGGAAAGTCTGTAGTCCAACTCTTAGTTAGTAGTTGGACTAATCTTGATATGAATTACCACTTAGTCTTTTTCTATCTTCATTAAAGTTATTTCTCATAGGTACGCATGCTAATCTTAGTTCAGATGATGCTACAAGCTTGGTTTTTAGTGTTTAAAAATTATGAAATCCTAGATATGAACTTGTTCAGCTATGTGTGCTTATCTCTTTTTCATACTTACCTACAG
Seq C2 exon
GCTTGCTATGGCATTCTCAAGATTCCAGAAGGTAGTTGGCTGTGCCGCTCCTGTGTCCTGGGCATTTATCCACAGTGTGTTTTATGTCCTAAGAAAGGTGGAGCCATGAAGACCACCAGAACAGGGACTAAATGGGCTCATGTCAGCTGTGCCCTGTGGATTCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037315-Phf16:NM_199317:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105134=EPL1=PD(12.6=26.8),PF107894=Phage_RpbA=PD(67.6=67.6),PF0013017=C1_1=PU(71.4=49.3),PF138311=PHD_2=PU(42.9=21.1)
A:
NA
C2:
PF0013017=C1_1=PD(24.5=21.4),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: